Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51800 564 / 0 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) AT3G59990 105 / 1e-24 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 105 / 1e-24 MAP2A methionine aminopeptidase 2A (.1) AT4G37040 45 / 4e-05 MAP1D methionine aminopeptidase 1D (.1) AT1G13270 44 / 9e-05 MAP1B, MAP1C methionine aminopeptidase 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102200 [exp] 658 / 0 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.004G084800 [exp] 103 / 4e-24 AT3G59990 712 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.017G133200 [exp] 98 / 3e-22 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.005G137400 [exp] 52 / 3e-07 AT4G37040 539 / 0.0 methionine aminopeptidase 1D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002851 [exp] 609 / 0 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10003379 [exp] 608 / 0 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 605 / 0 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 601 / 0 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 288 / 5e-88 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1) Lus10000403 [exp] 89 / 7e-19 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 65 / 2e-11 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 60 / 1e-09 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10027121 [exp] 54 / 1e-07 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10019308 [exp] 54 / 2e-07 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.016G119700.1 pacid=42809225 polypeptide=Potri.016G119700.1.p locus=Potri.016G119700 ID=Potri.016G119700.1.v4.1 annot-version=v4.1 ATGTCGTCAGACGACGAGAGAGAGGAGAGAGAGTTGGATCTTACTTCCCCTGAAGTCGTCACCAAATACAAAAGCGCGGCTGAAATTGTCAACAAGGCAT TGCAGTTAGCGATATCAGAATGCAAGCCGAAGGTTAAGATTGTTGATATTTGTGAAAAAGCAGATTCGTATATCAGAGAGCAATCTGGAAATATGTATAA GAATGTGAAGAAGAAGATTGAAAGGGGAGTTGCTTTTCCTACTTGTGTTTCTGTCAACAACACTGTTTGCCATTTTTCTCCGCTTGCTAGTGATGAATCA GTCTTAGAAGAAGGAGATGTTGTCAAGATTGACATGGGATGTCATATAGATGGATTTATTGCTGTTGTTGGACATACCCATGTTCTTCAGTCAGGGCCAG TAACGGGTAGGGCAGCTGATGTTATTGCAGCAGCCAACACTGCGGCTGAAGTTGCATTGAGGCTTGTAAGGCCTGGAAAGAAGAATAAAGATGTAACTGA AGCAATTCAGAAAGTTGCTGCTGCTTATGACTGCAAAATCGTTGAGGGTGTCCTAAGCCACCAGCTGAAGCAGTTTGTGATAGATGGAAACAAGGTAATT CTGAGTGTCTCTAATCCAGACACAAGAGTTGATGATGCAGAATTTGAGGAAAATGAAGTGTATGCAGTGGATATCTTTACAAGTACAGGGGAAGGCAAGC CAAAGCTGTTGGATGAGAAGACTACTACAATTTACAAGAGAGCTGTAGATAAGAATTATCACTTGAAGATGAAATCTTCCAGATTCATTTTCAGTGAAAT CAATCAGAAATTTCCTATCATGCCATTCTCTGCTAGAGCCCTCGAAGAGAAAAGGGCTCGGCTGGGATTAGTTGAATGTGTGAATCACGATCTACTGCAG CCATATCCAGTTCTTCATGAAAAGCCCGGTGATTGCGTTGCTCATATCAAGTTCACAGTATTGCTAATGCCAAATGGATCAGATCGGATCACATCACATG CTCTGCAAGAGTTGCAGCCTACAAAAACGATAGATGATCCTGAAATCAAGGCGTGGCTAGCTTTGGGTACAAAGACAAAGAAGAAGGGCGGTGGGAAAAA GAAGAAAGCTAAGAAAGCAGGCGAAAAAGCTGAGGATGCAACAGAAGCTGAACCCATGGATGCAACAGAAGCTGAACCCATGGATGCAACTACAAATGGT GCCACCGCCGTCTAG
AA sequence Show only first row Show all	>Potri.016G119700.1 pacid=42809225 polypeptide=Potri.016G119700.1.p locus=Potri.016G119700 ID=Potri.016G119700.1.v4.1 annot-version=v4.1 MSSDDEREERELDLTSPEVVTKYKSAAEIVNKALQLAISECKPKVKIVDICEKADSYIREQSGNMYKNVKKKIERGVAFPTCVSVNNTVCHFSPLASDES VLEEGDVVKIDMGCHIDGFIAVVGHTHVLQSGPVTGRAADVIAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSHQLKQFVIDGNKVI LSVSNPDTRVDDAEFEENEVYAVDIFTSTGEGKPKLLDEKTTTIYKRAVDKNYHLKMKSSRFIFSEINQKFPIMPFSARALEEKRARLGLVECVNHDLLQ PYPVLHEKPGDCVAHIKFTVLLMPNGSDRITSHALQELQPTKTIDDPEIKAWLALGTKTKKKGGGKKKKAKKAGEKAEDATEAEPMDATEAEPMDATTNG ATAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	0	1
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	1.41	0.8825
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	1.41	0.8808
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.007G071100 [exp]	6.00	0.8373
AT1G42440			unknown protein		Potri.005G250100 [exp]	7.48	0.8129
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	7.93	0.8055
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	8.66	0.8241
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	9.16	0.8233
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	9.59	0.7616
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	10.00	0.7922
AT3G07870			F-box and associated interacti...		Potri.011G137200 [exp]	12.00	0.7728

Compare expression of checked genes

Potri.016G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.