Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58590 266 / 1e-90 RANBP1 RAN binding protein 1 (.1) AT2G30060 255 / 3e-86 Pleckstrin homology (PH) domain superfamily protein (.1) AT1G07140 255 / 3e-86 SIRANBP Pleckstrin homology (PH) domain superfamily protein (.1) AT3G15970 50 / 6e-07 NUP50 (Nucleoporin 50 kDa) protein (.1) AT1G52380 43 / 8e-05 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102400 [exp] 342 / 2e-120 AT5G58590 260 / 2e-88 RAN binding protein 1 (.1) Potri.009G073400 [exp] 283 / 3e-97 AT5G58590 267 / 3e-91 RAN binding protein 1 (.1) Potri.001G278900 [exp] 267 / 4e-91 AT5G58590 263 / 6e-90 RAN binding protein 1 (.1) Potri.003G056400 [exp] 48 / 2e-06 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037242 [exp] 273 / 4e-93 AT5G58590 269 / 6e-92 RAN binding protein 1 (.1) Lus10035655 [exp] 272 / 1e-92 AT5G58590 267 / 4e-91 RAN binding protein 1 (.1) Lus10035656 [exp] 271 / 2e-92 AT5G58590 270 / 3e-92 RAN binding protein 1 (.1) Lus10037241 [exp] 269 / 8e-92 AT5G58590 264 / 4e-90 RAN binding protein 1 (.1) Lus10037931 [exp] 51 / 3e-07 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00638 [poplar] [flax] Ran_BP1 RanBP1 domain
Representative CDS sequence Show only first row Show all	>Potri.016G119800.1 pacid=42809532 polypeptide=Potri.016G119800.1.p locus=Potri.016G119800 ID=Potri.016G119800.1.v4.1 annot-version=v4.1 ATGGCAAGCAGTATCTCCGCCACAGCTGCAAGCGAGCCAGAGCACAGTACCAAAGAAAGAGAAGAAGAGAATGCAACTTCAACTAGAGCAGCGGAGGATG AAGATACCGGAGCTCAAGTTGCACCTATCGTGAAGCTGGAAGAAGTCGCTGTTACTACTGGCGAGGAAGATGAAGAAGCCATCCTTGATCTGAAGGCGAA GTTGTATAGATTTGATAAAGAAGGGAATCAGTGGAAAGAGAGAGGAGTTGGGACTGTGAAGCTTTTGAAACATAAAGAATCTGCCAAAGTTCGTCTTGTT TTTCGCCAATCTAAGACTCTCAAGATCTGCGCTAACCATCTAGTTCTGCCGACAATTAATGTGCAAGAGCATCAAGGAAATGACAAATCATGTCTGTGGC ATGCTGCTGATTTTGCTGACGGGGAATTGAAGGATGAGCTTTTCTGCATAAGATTTCCTTCAGTTGAAAATTGCAAGACCTTCAAGGAGACTGTTGAAGA GGTGGCCGAGAGTCGGGGAAAGAAAGTGGAGAGTAAAGATGCTACAGATGCTGCTGGACTCATTGAGAAGTTGAGTGTTGAGGATAGTAAAAAGGAAGAA AAAGAAAAGGAAGAGGTACCTGTTGCGGCCAAAGAGTTTAGCAAAACTACAGACGATAAAGTGAAGGCAGAGGTAGAAAAGAAGGACGAGCCTGCTTCGT CTGCATAG
AA sequence Show only first row Show all	>Potri.016G119800.1 pacid=42809532 polypeptide=Potri.016G119800.1.p locus=Potri.016G119800 ID=Potri.016G119800.1.v4.1 annot-version=v4.1 MASSISATAASEPEHSTKEREEENATSTRAAEDEDTGAQVAPIVKLEEVAVTTGEEDEEAILDLKAKLYRFDKEGNQWKERGVGTVKLLKHKESAKVRLV FRQSKTLKICANHLVLPTINVQEHQGNDKSCLWHAADFADGELKDELFCIRFPSVENCKTFKETVEEVAESRGKKVESKDATDAAGLIEKLSVEDSKKEE KEKEEVPVAAKEFSKTTDDKVKAEVEKKDEPASSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Potri.016G119800 [exp]	0	1
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	1.41	0.7833
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Potri.017G026500 [exp]	3.16	0.7609	GLX2.3
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	8.71	0.7442
AT4G30900			DNAse I-like superfamily prote...		Potri.006G184300 [exp]	10.90	0.8077
AT4G12740			HhH-GPD base excision DNA repa...		Potri.014G198000 [exp]	13.85	0.6967
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	15.23	0.7634
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.019G087700 [exp]	21.63	0.7546	Pt-SERK2.3
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Potri.004G218001 [exp]	22.24	0.7800
AT5G15880			unknown protein		Potri.017G110300 [exp]	26.53	0.7561
AT3G26935			DHHC-type zinc finger family p...		Potri.001G325400 [exp]	28.00	0.7454

Compare expression of checked genes

Potri.016G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.