Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08960 1547 / 0 ARM repeat superfamily protein (.1) AT1G26170 79 / 1e-14 ARM repeat superfamily protein (.1) AT3G59020 59 / 3e-08 ARM repeat superfamily protein (.1.2) AT5G53480 50 / 8e-06 ARM repeat superfamily protein (.1) AT2G31660 50 / 1e-05 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT2G46520 49 / 2e-05 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G08943 45 / 0.0002 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149600 [exp] 67 / 6e-11 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 67 / 8e-11 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 66 / 2e-10 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 61 / 4e-09 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 52 / 2e-06 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.015G010400 [exp] 50 / 8e-06 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.002G172700 [exp] 50 / 9e-06 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.012G017500 [exp] 47 / 7e-05 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 46 / 0.0002 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007842 [exp] 1556 / 0 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1) Lus10004753 [exp] 1470 / 0 AT3G08960 1432 / 0.0 ARM repeat superfamily protein (.1) Lus10008367 [exp] 94 / 7e-23 AT3G08960 93 / 2e-23 ARM repeat superfamily protein (.1) Lus10026726 [exp] 59 / 2e-08 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 59 / 3e-08 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10005969 [exp] 49 / 4e-06 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030241 [exp] 50 / 1e-05 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10041453 [exp] 47 / 0.0001 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10035079 [exp] 46 / 0.0002 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G119900.10 pacid=42809928 polypeptide=Potri.016G119900.10.p locus=Potri.016G119900 ID=Potri.016G119900.10.v4.1 annot-version=v4.1 ATGGCGCTCTCAGCTTCCGATTTAGGCACGATATATTCTTTATTGACGAATTCAATGAGCGGCGATGAGAGCGTCCGCAAGCCAGCCGAGGCGGCGCTCT CGCAGTTCGAGAGTCGGCCTGGTTTCTGCTCCTGTCTAATGGAAGTTATAACTGCAGCAGATTTAGCTTCGCAAGTCGATGTTCGATTATTAGCTTCGGT GTACTTTAAGAATAGTATCAATCGGTACTGGAGGAACCGGAGGGATTCTGCGGCAATAAGCAGTGAAGAGAAAAATCACTTGAGACAAAAATTACTGTCG CATTTGAGAGAAGAGAACGATAAGATAGCTGGACTGTTGGCGGTTCTTATTTCCAAGATTGCTCGCCTTGATTATCCAAGAGAATGGCCAGAGCTCTTTT CAGTTTTAGCGAACAAACTTCAATCGGCAGATGTCCTTACTTCTCACAGGATTTTTTTGATTCTGTTCCGAACTTTGAAGGAATTATCCACTAAACGTCT TACTGTTGACCAAAGGAACTATGCAGAGATAACATCCCATCTCTTTGGATATAGCTGGGGCCTTTGGCAGAGTGATGTTCAAGCTATATTAAATAGTTTC TCTACACTTGCACAAAGCTATACTTCTAATGTTCTGGAACAGCGTCATGATGAGCTGTATCTAATGAGTGAGAGATGGCTATTATGTTTAAAAATAATTC GCCAATTGATTATTTCAGGGTTTCCAAGTGATTCAAAATGTGTACAGGAGGTCCAACCAGTCAAGGAGGTTTCTCCTATACTCTTGAAAGCCATTCAGTC ATTTCTCCCATACTATTCATCTTTCCAGAAGGGACATCCTAAATTTTGGGACTTCATAAAGAGGGCATGTACCAAATTAATGAAGGTTTTGGTCACAATT CAGGGCAGACATCCTTATTCATTTGGCGACAAGTCTGTTCTTCCTCCTGTCATGGATTTCTGTTTAAACAAGATAACTGATCCGGGTCCATATATTTTAT CATTTGAGCAATTCCTGATTCAATGCATGGTAATGGTGAAGTGTGTCCTTGAGTGTAAGGAGTATAAGCTAAACCTAACTGGGCGGGTGATGGATGAAAG TGTGATTACAGTGGAGCAGATGAAAAAGAACATTTCCAATGCTGTTGGTGGTGTCCTGACTTCTCTTCTTCCAAGTGAACGAATAATACATTTGTGTAAT GTGTTAATAAGGAGGTATTTTGTTCTAACTGCTAGTGATTTGGAGGAGTTGTATCAAAACCCAGAATCTTTTCATCATGAGCAGGATATGGTTCAGTGGA CTGAAAAACTGAGGCCTTGTGCTGAAGCTTTATACATAGTATTGTTTGAAAACCATAGCCAGCTGTTGGGTCCTGTTGTGGTGTCCATCCTTCAGGAGGC AATGAATGCTTGCCCAACATCAGTTACTGAAATCACTCCTGGGCTACTTCTTAAAGATGCTGCCTATGGTGCTGCTGCATATGTTTATTATGAGCTCTCT AACTACCTCAGCTTCAAAGATTGGTTTAATGGTGCTTTATCCCTTGAACTGTCGAATGATCATCCAAATATGTGTGTTATCCATCGAAAAGTTGCACTGA TACTAGGACAATGGGTTTCCGAGATTAAAGCTGACACAAAGAGACCAGTGTATTGTAGTTTGATCAGATTGCTACAAGACAAAAACCTGTCTGTTAAGCT TGCAGCTTGTCGGTCTTTGTGTTTGCATGTTGAGGATGCAAACTTCTCAGAGCAAGAATTTTTAGATCTCCTTCCTATTTGCTTTGATTCGTGCTTTAAG TTGGTTGAGGAGGTTCAGGAGTTTGACTCGAAGGTTCAGGTTTTGAATTTGATATCTGTTCTTATTGGACACGTCCATGAGATCGTTCCATTTGCAAACA AGTTGGTGCAATTTTTTCAGAAGGTTTGGGAGGAGGCTTCCGGTGAGAGTCTTCTGCAGATTCAGCTTCTCATTGCTTTGCGGAATTTTGTGGTTGAACT TGGCTACCAGTCACCTACTTGCTACAATGTGCTATTGCCTATTCTGCATGGTGGAATTGATATAAATAGCCCTGATATACTCAATCTTTTAGAGGATGGC ATGCTGTTATGGGAAGCTACACTTTCCCATGCGCCTGCAATGGAGCCTCGACTGCTAGCGTACTTCCCATGTCTTGTGGAAATCATGGAAAGAAGTTTCG ACCACTTGCAGGTCGCTGTAAATATCATGGAGGATTACATAATTTTGGGTGGGACTGAATTTCTAAGAATGCATGCTTCCAGCGTTGCCAAAGTTCTTGA TCTGATTGTTGGAAATGTTAATGATAGAGGCCTATTATCAACTCTTCCTATCATCGATATATTAGTACAGTGCTTCCCTGCTGAAGTGCCCCCGCTTATT AGCAGTACTTTGCAAAAACTAATCATGATATGTTTAAGTGGAAGAGATGATTTTGAACCTTCCAAGGCAGCTGTTAAAGCATCTGCAGCTGCAATTCTAG CAAGGATTTTGGTGATGAACACCAATTACCTTGCCCAATTGACAGCAGAACCATCACTTTCATTGCTTCTCCAGCAGGCAGACATTCCAATTGAGGAAAA TATACTTCTTTGTTTGGTTGACATATGGCTTGACAAGATAGATAATGCATCTTCTGATCAGAAAAAGACATTTGGGTTAGCACTTTCAATAATTTTGACA CTAAGACTGCCTCAAGTCGTTGATAAACTTGATCAGATCCTCAGTGTATGTACAAGTGTAATTTTGGGTGCAAATGACGATTTAACGGAGGAAGAGTCAA GTGGTGATAACATGAGCTCCAGCAAGTTTCATGGTGAAGGCGTAATTCCAAGTAGAGAGTACAGGAAAAGACAGATTAAATTTTCAGATCCTATAAAACG ATGGTCTTTGGAGAACTCAGTAAGAGAGAATCTTCAAACATGTGCTACTCTTCATGGAGAATCTTTTAATTCAGCTATTAGTAGAATGCATCCAGCAGCA TTTGCACAGTTGAAACAGGCTTTGAAGATGCCATAG
AA sequence Show only first row Show all	>Potri.016G119900.10 pacid=42809928 polypeptide=Potri.016G119900.10.p locus=Potri.016G119900 ID=Potri.016G119900.10.v4.1 annot-version=v4.1 MALSASDLGTIYSLLTNSMSGDESVRKPAEAALSQFESRPGFCSCLMEVITAADLASQVDVRLLASVYFKNSINRYWRNRRDSAAISSEEKNHLRQKLLS HLREENDKIAGLLAVLISKIARLDYPREWPELFSVLANKLQSADVLTSHRIFLILFRTLKELSTKRLTVDQRNYAEITSHLFGYSWGLWQSDVQAILNSF STLAQSYTSNVLEQRHDELYLMSERWLLCLKIIRQLIISGFPSDSKCVQEVQPVKEVSPILLKAIQSFLPYYSSFQKGHPKFWDFIKRACTKLMKVLVTI QGRHPYSFGDKSVLPPVMDFCLNKITDPGPYILSFEQFLIQCMVMVKCVLECKEYKLNLTGRVMDESVITVEQMKKNISNAVGGVLTSLLPSERIIHLCN VLIRRYFVLTASDLEELYQNPESFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNACPTSVTEITPGLLLKDAAYGAAAYVYYELS NYLSFKDWFNGALSLELSNDHPNMCVIHRKVALILGQWVSEIKADTKRPVYCSLIRLLQDKNLSVKLAACRSLCLHVEDANFSEQEFLDLLPICFDSCFK LVEEVQEFDSKVQVLNLISVLIGHVHEIVPFANKLVQFFQKVWEEASGESLLQIQLLIALRNFVVELGYQSPTCYNVLLPILHGGIDINSPDILNLLEDG MLLWEATLSHAPAMEPRLLAYFPCLVEIMERSFDHLQVAVNIMEDYIILGGTEFLRMHASSVAKVLDLIVGNVNDRGLLSTLPIIDILVQCFPAEVPPLI SSTLQKLIMICLSGRDDFEPSKAAVKASAAAILARILVMNTNYLAQLTAEPSLSLLLQQADIPIEENILLCLVDIWLDKIDNASSDQKKTFGLALSIILT LRLPQVVDKLDQILSVCTSVILGANDDLTEEESSGDNMSSSKFHGEGVIPSREYRKRQIKFSDPIKRWSLENSVRENLQTCATLHGESFNSAISRMHPAA FAQLKQALKMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	0	1
AT5G58100			unknown protein		Potri.018G150600 [exp]	1.00	0.8443
AT5G17440			LUC7 related protein (.1)		Potri.013G084800 [exp]	2.44	0.7708
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.016G095750 [exp]	5.91	0.7559
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	6.48	0.7424
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	8.00	0.7370
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Potri.008G035300 [exp]	8.71	0.7577
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	9.16	0.7135
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.005G094200 [exp]	11.22	0.7366
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	16.61	0.7558
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	16.97	0.7186

Compare expression of checked genes

Potri.016G119900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.