Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08970 479 / 5e-164 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT2G22360 92 / 8e-20 DNAJ heat shock family protein (.1) AT4G39960 92 / 1e-19 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G20560 90 / 2e-19 DNAJ heat shock family protein (.1) AT4G28480 85 / 1e-17 DNAJ heat shock family protein (.1.2) AT1G80030 85 / 3e-17 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G62600 82 / 7e-17 ATERDJ3B DNAJ heat shock family protein (.1) AT3G17830 83 / 2e-16 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G79940 81 / 9e-16 ATERDJ2A DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) AT3G08910 76 / 7e-15 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073900 [exp] 87 / 5e-18 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 86 / 1e-17 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 83 / 9e-17 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.014G122600 [exp] 82 / 1e-16 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 79 / 1e-15 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 77 / 3e-15 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.004G072200 [exp] 79 / 4e-15 AT1G79940 1087 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.017G148800 [exp] 79 / 4e-15 AT1G79940 1062 / 0.0 DnaJ / Sec63 Brl domains-containing protein (.1.2.3.4) Potri.007G136700 [exp] 77 / 4e-15 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003380 [exp] 674 / 0 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10002852 [exp] 670 / 0 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017687 [exp] 92 / 8e-20 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 90 / 7e-19 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 90 / 9e-19 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 84 / 2e-17 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10031336 [exp] 83 / 2e-16 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10014584 [exp] 81 / 4e-16 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 81 / 4e-16 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 80 / 5e-16 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G120000.1 pacid=42810173 polypeptide=Potri.016G120000.1.p locus=Potri.016G120000 ID=Potri.016G120000.1.v4.1 annot-version=v4.1 ATGAAAACGCGATATACGGTGCCGTTCTTGCTCCTTTTTTCTCTGATTTTGTTAACGCTGGAAGCGAAAACCGTTGACCCTTACAAGGTTCTTGGAGTGG AGAAAAACGCAAGTCAACGAGAAATACAAAAAGCTTTCCACAAGCTTTCTCTTCAGTATCACCCTGACAAGAATAAAAATAAGGGCGCTCAAGAAAAGTT TGCGGAGATCAATAATGCATATGAGATTCTATCTGATGAAGAGAAAAGGAAAAATTATGATCTATATGGAGATGAGAAGGGCAATCCTGGATTTAATGCT GGGTATCCTGGGGACCAGGGTGGGTATACTTATTTCACAAATGGTGGACAGGGGCAAAATAGTTATACCTTCAGACCAGGTGACTGGCAGGATATGGGGG ACCAGGGAAATTCCCGGTCATTTTCATTTTCCTTTGGTGGTCCCAGTCCTCAGAGTTCATTTGGTTTTGGCCTGAATGATATTTTTTCCAATTTTTTTGG GGGTGATCTTGGTGGAGGGCAGTTTGGTGGTTTTGGTGGTTCAACCAGGTCTCAATCTAGGTCACAAACTGGTTCTAGAAGTTCTCCCAAGAGCATCAAA GCCATAAATTCTCAAGTCTTCAATAAAGAAATTGCTGACCAAGGAATGACTTGGCTTTTATTAACTTATACTTCCTCTTTGAAGGGGAGCCAATTTTATG AATCAATCATACAGGAGGTCGCAGATTCATTACAAGGAGCTTTAAAGGTTGGGAGCATAAATTGTGAAACTGAAATGTCCTTTTGTAAGGAACTTGGGAC TCAACCACGACGAGTGCCTAGGGTATTTGTTTATTCAAACAAAGCAAGCGATAAGGGTTTTTTGGTGGAGTACAATGGTGATTTGGTCGCAAAAACTTTA AAATCTTTTTGCCAAGACCATTTACCAAGGTTTTCAAAGCGGATTGACCTGAAACATCTTCAGTCTTATTCTGTCAAGGAGGAAAAATTACCCAGAGTTG TGCTTCTTTCCACCAAAAAAGATACACCCGTGATCTGGCGTGCGCTTAGTGGTTTGTTTCATAAACGCTTCATTTTCAATGACGTGGAGGTTCGCGATGT TACTGACCCAATGACAAAGAAGTTAGGAGTTGATGCGCTTCCAGCTATTGTTGGTTGGTTATCAAACGGGGAGAAACATGTCTTAAAATCGGGGATTTCT GTGAAAGATTTGAAATCTGCTGTTCATGATCTCAGTACCTTACTTGAAGGGTTTGAAAAAAAGAACAAGAAAGCAGCAGCAAGTAAGGATAGAAAAGCAC AGGCTGATTCTGGTGGGAAACATGTATCTTTACTAACAGGATCAAATTTTGATGCTCTATGTGGGGGCAAAACCCCTGTTTGCATCATAGGTGGTTTCAG ATCTTTGAAAGTAAGGGAGAAGCTGGAAGACATCCTGTCCATGGTCTCTCAAAAATCATTATCAAGGCGACGGAATGCAGCTTCTGTCTCTGGGGATTCT ATTTCTTACACTCTTTTAGATGTTGCCAAGCAGCCATCATTCTTGAACGCATTTGACAAATCTGGATACAAATCGTCAGATAAGTTATTGTTAGCCTATA AACCTCGGACGCAGAAGTTTGCAGCATTTAAAGGTGAAATGACTGCAGAAGAGGTGGAAAAATTTATCAGTTCTGTTCTTAATGGGGACGCGCAATTTAC CAAGACAAGACAGAAGCCTGTCCTCAAATGA
AA sequence Show only first row Show all	>Potri.016G120000.1 pacid=42810173 polypeptide=Potri.016G120000.1.p locus=Potri.016G120000 ID=Potri.016G120000.1.v4.1 annot-version=v4.1 MKTRYTVPFLLLFSLILLTLEAKTVDPYKVLGVEKNASQREIQKAFHKLSLQYHPDKNKNKGAQEKFAEINNAYEILSDEEKRKNYDLYGDEKGNPGFNA GYPGDQGGYTYFTNGGQGQNSYTFRPGDWQDMGDQGNSRSFSFSFGGPSPQSSFGFGLNDIFSNFFGGDLGGGQFGGFGGSTRSQSRSQTGSRSSPKSIK AINSQVFNKEIADQGMTWLLLTYTSSLKGSQFYESIIQEVADSLQGALKVGSINCETEMSFCKELGTQPRRVPRVFVYSNKASDKGFLVEYNGDLVAKTL KSFCQDHLPRFSKRIDLKHLQSYSVKEEKLPRVVLLSTKKDTPVIWRALSGLFHKRFIFNDVEVRDVTDPMTKKLGVDALPAIVGWLSNGEKHVLKSGIS VKDLKSAVHDLSTLLEGFEKKNKKAAASKDRKAQADSGGKHVSLLTGSNFDALCGGKTPVCIIGGFRSLKVREKLEDILSMVSQKSLSRRRNAASVSGDS ISYTLLDVAKQPSFLNAFDKSGYKSSDKLLLAYKPRTQKFAAFKGEMTAEEVEKFISSVLNGDAQFTKTRQKPVLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Potri.016G120000 [exp]	0	1
AT1G03070			Bax inhibitor-1 family protein...		Potri.002G049000 [exp]	1.00	0.9875
AT2G45380			unknown protein		Potri.014G069100 [exp]	2.23	0.9833
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	2.44	0.9854
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	2.44	0.9856
AT5G49220			Protein of unknown function (D...		Potri.010G000700 [exp]	4.47	0.9778
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	4.89	0.9844
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Potri.009G081500 [exp]	5.29	0.9611
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.001G285500 [exp]	5.65	0.9578
AT1G23100			GroES-like family protein (.1)		Potri.008G130500 [exp]	5.65	0.9715
AT1G31240			Bromodomain transcription fact...		Potri.012G119500 [exp]	7.07	0.9636

Compare expression of checked genes

Potri.016G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.