Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01310 876 / 0 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT2G40600 45 / 0.0001 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002216 [exp] 963 / 0 AT5G01310 862 / 0.0 APRATAXIN-like (.1) Lus10003385 [exp] 960 / 0 AT5G01310 862 / 0.0 APRATAXIN-like (.1) Lus10034226 [exp] 52 / 2e-07 AT2G40600 309 / 1e-107 appr-1-p processing enzyme family protein (.1) Lus10029039 [exp] 52 / 4e-07 AT2G40600 310 / 3e-108 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0223 [poplar] [flax] MACRO PF01661 [poplar] [flax] Macro Macro domain CL0265 [poplar] [flax] HIT PF11969 [poplar] [flax] DcpS_C Scavenger mRNA decapping enzyme C-term binding CL0023 [poplar] [flax] P-loop_NTPase PF13671 [poplar] [flax] AAA_33 AAA domain CL0361 [poplar] [flax] C2H2-zf PF16278 [poplar] [flax] zf-C2HE C2HE / C2H2 / C2HC zinc-binding finger
Representative CDS sequence Show only first row Show all	>Potri.016G120200.2 pacid=42809743 polypeptide=Potri.016G120200.2.p locus=Potri.016G120200 ID=Potri.016G120200.2.v4.1 annot-version=v4.1 ATGGCTGTCGATCATCAAAAAATGGATATGGACATCGACAACAAAGGTGAAGAACAGCAGAAAGGAAAGCCTGTGATGGTGATTTTAGTGGGTGCACCAG GAAGTGGCAAATCAACTTTCTGTGAACACGTAATGGGTTCCTCTTTAAGACCTTGGACTCGCATTTGTCAGGACACTATTAATAATGGTAAAGCTGGAAC TAAGCCACAGTGTCTAAAGAGAGCAGCGGCTGCGTTGAAAGAAGGCAAAAGTGTGTTTATTGACAGATGCAATTTGGATAAAGAACAACGCTCGGATTTT GTTAAGTTAGATTGTGGCGCACAAGTAGATGTTCATGCTGTTGTGCTTGATCTTCCTGCTCAGCTTTGTATTTCGCGATCTGTAAAAAGGACTGGACATG AGGGAAATTTGCAAGGTGGGAAAGCTGCTGCGGTTGTGAATAGAATGTTGCAAAAGAAAGAGTTGCCTAAGCTTAATGAAGGGTTTGCTCGAATTGTGTT TTGTCATAATGAGAATGATGTTGAGGCTACAATTAAGGCATATACTGCACTTGGTCCTTTGGATACCCTTTCAAATGGTTGTTTTGGCCAGAAGAATCCA GATGCAAAAATCCAACTTGGTATAATGAAGTTCTTGAAGAAAGTCGAGGCTCCTTCCAGTTTAGGATCATGTTCAGATAGAGTGCAGGATTCTGCCTGTC CTCAGGCTCGTAACGCAAACAATACCTGCTGCAAAGGAACAACTAAAGAGTCTTTATTACTAGGTGCTGCTAGTAAGGATGTAAAAGAGAGTGAAGACTT GGCCAAAGACTCTGTTGACGCTGATGTATCTGTGGGTGACATTACCACTCTAGCATTTCCATCTATTTCGACAGCTGATTTCCAGTTCAACAATGAGAAA GCATCAGATATCATTGTTGAGAAAGTTGAAGAATTTGTGAATAAGCTTGAAAATGCCAGGTTTGTTCTTGTGGACCTGAGTCATGGATCAAAGATTCTGT CTTTGGTTAGGGCTAAAGCTGCAAAAAGGAACATTGACTCTAAAAAGTTCTTCACGTTTGTGGGAGATATAACTCGACTTTATTCGCAAGGAGGTTTACG CTGCAATGCGATAGCTAATGCTGCCAACTGGCGATTGAAACCTGGAGGTGGAGGTGTAAATGCTGCAATTTTCGCTGCAGCAGGTCCTTCCCTAGAGACT GCAACTAAGGAACGAGCAAAATCTCTTCTCCCTGGACATGCTGTGGTTGTTCCTCTCCCTTCAGATTCTCCATTGTATACTAGGGAAGAGGTATCCCATG TCATCCATGTTCTTGGGCCAAATATGAACCCACAAAGACCTAATTCTCTGAATAATGACTACACTAAAGGTTGCAGCATTCTGCGTGAAGCTTACACATC ACTTTTTACTGGATTTCTGTCTATTGTGAGATCCCGTTCAAAATTACCAAGGAGAATCATTGAAAAACTTGAATCGTCACCTTCAGATTTGAAAGATCCC TCTCATGGTCCCAGGAATCATTTAACAAATAGTGATCAAAAGATTAAGAGAGATGATGACTGTGTATATGAGAGAAGCAAAAAATGCAAGGGGACTCACG ATGAAACTGTAGCTGATATTTCTGCTCCTAGTTCCACATATGGAAAGGTAACTGGAGACAAAAGTAAGTTAGAAGGACCGACATCAAAGAGTTGGGGCTC ATGGGCACAAGCTCTTTACCACATCGCCATGCATCCTGAGAAGCACAAGGACAAGTTGCTGGAGGTTTTAGATGATGTTGTTGTATTAAATGACCTTTAT CCAAAGGCATGCAAGCATCTCCTAGTTTTGGCACGACATGAAGGTCTTGATTGTCTTGCAGATGTGCATCAAGAACACCTTCAGTTGTTAATGACAATGC ATGCTGTGGGTTTGAAATGGGCTGAGAAATTCTTGCATGAAGATTCATCAATGGTCTTCCGCCTTGGATACCACTCGGTCCCTTCAATGAGACAATTACA CTTGCATGTGATTAGCCAGGATTTCAATTCCAATCATCTCAAGAACAAGAAGCACTGGAACTCTTTTAATACTGCCTTTTTTCGAGATTCAGTGGATGTG ATTGAAGAAATCAAGAATCACGGGAAAGCAACAATAAAAGATGAAGATTGCCGGTTGTCAATGGAGTTGCGATGCCACCGATGTAGAAGTGCACACCCTA ATATACCCAGGCTGAAATCACATATTAGCATTTGTCAAGCCCCCTTTCCCCATGCCCTTCTTGAAAATGGCCGTTTAGTGCTTGCACCAAAACATAATTG A
AA sequence Show only first row Show all	>Potri.016G120200.2 pacid=42809743 polypeptide=Potri.016G120200.2.p locus=Potri.016G120200 ID=Potri.016G120200.2.v4.1 annot-version=v4.1 MAVDHQKMDMDIDNKGEEQQKGKPVMVILVGAPGSGKSTFCEHVMGSSLRPWTRICQDTINNGKAGTKPQCLKRAAAALKEGKSVFIDRCNLDKEQRSDF VKLDCGAQVDVHAVVLDLPAQLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPKLNEGFARIVFCHNENDVEATIKAYTALGPLDTLSNGCFGQKNP DAKIQLGIMKFLKKVEAPSSLGSCSDRVQDSACPQARNANNTCCKGTTKESLLLGAASKDVKESEDLAKDSVDADVSVGDITTLAFPSISTADFQFNNEK ASDIIVEKVEEFVNKLENARFVLVDLSHGSKILSLVRAKAAKRNIDSKKFFTFVGDITRLYSQGGLRCNAIANAANWRLKPGGGGVNAAIFAAAGPSLET ATKERAKSLLPGHAVVVPLPSDSPLYTREEVSHVIHVLGPNMNPQRPNSLNNDYTKGCSILREAYTSLFTGFLSIVRSRSKLPRRIIEKLESSPSDLKDP SHGPRNHLTNSDQKIKRDDDCVYERSKKCKGTHDETVADISAPSSTYGKVTGDKSKLEGPTSKSWGSWAQALYHIAMHPEKHKDKLLEVLDDVVVLNDLY PKACKHLLVLARHEGLDCLADVHQEHLQLLMTMHAVGLKWAEKFLHEDSSMVFRLGYHSVPSMRQLHLHVISQDFNSNHLKNKKHWNSFNTAFFRDSVDV IEEIKNHGKATIKDEDCRLSMELRCHRCRSAHPNIPRLKSHISICQAPFPHALLENGRLVLAPKHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	0	1
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	1.41	0.9280
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	2.64	0.9060
AT5G44010			unknown protein		Potri.014G192200 [exp]	5.19	0.9143
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	5.47	0.9091
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	6.63	0.9036
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Potri.013G147200 [exp]	6.70	0.9057
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	7.48	0.9058
AT4G01960			unknown protein		Potri.014G118000 [exp]	8.36	0.8562
AT5G36930			Disease resistance protein (TI...		Potri.011G008420 [exp]	9.59	0.8693
AT1G66430			pfkB-like carbohydrate kinase ...		Potri.017G126300 [exp]	10.39	0.8954

Compare expression of checked genes

Potri.016G120200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.