Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 73 / 4e-15 AtRLP7 receptor like protein 7 (.1) AT1G45616 63 / 1e-11 AtRLP6 receptor like protein 6 (.1) AT3G11080 62 / 2e-11 AtRLP35 receptor like protein 35 (.1) AT3G11010 62 / 3e-11 AtRLP34 receptor like protein 34 (.1) AT5G27060 55 / 8e-09 AtRLP53 receptor like protein 53 (.1) AT2G34930 53 / 2e-08 disease resistance family protein / LRR family protein (.1) AT3G28890 53 / 3e-08 AtRLP43 receptor like protein 43 (.1.2) AT3G05360 52 / 5e-08 AtRLP30 receptor like protein 30 (.1) AT2G02220 52 / 6e-08 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G26730 51 / 1e-07 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 218 / 6e-66 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 105 / 1e-26 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 100 / 7e-25 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G389100 [exp] 86 / 1e-19 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 84 / 4e-19 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.011G104600 [exp] 84 / 7e-19 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.016G127000 [exp] 84 / 7e-19 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G104900 [exp] 80 / 2e-17 AT1G71400 362 / 2e-111 receptor like protein 12 (.1) Potri.011G105150 [exp] 78 / 8e-17 AT1G45616 405 / 3e-125 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002215 [exp] 143 / 2e-40 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10003387 [exp] 143 / 1e-39 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10003389 [exp] 143 / 2e-39 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 138 / 8e-38 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 127 / 5e-34 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10009330 [exp] 121 / 4e-32 AT1G71400 245 / 2e-69 receptor like protein 12 (.1) Lus10006824 [exp] 117 / 1e-30 AT3G23110 185 / 2e-50 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006825 [exp] 116 / 3e-30 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004310 [exp] 103 / 1e-25 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10016401 [exp] 94 / 2e-23 AT1G71390 87 / 6e-19 receptor like protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G120466.2 pacid=42810228 polypeptide=Potri.016G120466.2.p locus=Potri.016G120466 ID=Potri.016G120466.2.v4.1 annot-version=v4.1 ATGCCCTCCAGCATCAACACAGGTCTGGTTTCTGGCAGATGCCCGAGCGATCAGCAATCTTTGTTGCTCCAATTAAAGAAAACTCTTTTATTCAATGAAT CTATGTCCACCAAACTGGTGACATGGAATCCCAGCTCGGATTGCTGCGAGTGGAGAGGTATAAGCTGCGATATTGGTGGGCTTAATCGTGTTATCGGCCT CGACTTGAGCAATGAATCCATCACTGGTGGACTTGACGATTCAAGCGGGCTTTTCAGTCTTCAATTTCTTCAGAGTCTAAACTTGTCTTTCAACAGCTTC AGCACAGCTCTGCCAGTCGGGTTTGCCAACCTCACGGATTTGATTTCACTGAATTTGTCCAGTGCTGGCTTTACAGGCCAGATTCCAAATGATATCTCAA AGCTGACAAAGTTGGTCAGTCTTGATTTGTCTGCCCTTTCCTTCCCTGGAAGTCCTGCACTGAAACTCAAGAAGCCTAATTTTGCAACATTGGTTCAAAA TCTCACACACCTAACAGAGCTCCTTCTTGATGGTGTTAATATATCAGCACACGGAAATGACTAG
AA sequence Show only first row Show all	>Potri.016G120466.2 pacid=42810228 polypeptide=Potri.016G120466.2.p locus=Potri.016G120466 ID=Potri.016G120466.2.v4.1 annot-version=v4.1 MPSSINTGLVSGRCPSDQQSLLLQLKKTLLFNESMSTKLVTWNPSSDCCEWRGISCDIGGLNRVIGLDLSNESITGGLDDSSGLFSLQFLQSLNLSFNSF STALPVGFANLTDLISLNLSSAGFTGQIPNDISKLTKLVSLDLSALSFPGSPALKLKKPNFATLVQNLTHLTELLLDGVNISAHGND

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120466 [exp]	0	1
AT5G27550			P-loop containing nucleoside t...		Potri.005G031801 [exp]	10.81	0.8786
					Potri.017G047000 [exp]	12.32	0.8639
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G017566 [exp]	22.36	0.9068
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136601 [exp]	23.23	0.8270
AT5G08450			unknown protein		Potri.018G145552 [exp]	29.94	0.8383
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140700 [exp]	31.78	0.8731
AT4G19380			Long-chain fatty alcohol dehyd...		Potri.004G234900 [exp]	33.82	0.8482
AT1G53430			Leucine-rich repeat transmembr...		Potri.001G386100 [exp]	38.10	0.8588
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	38.49	0.8499
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022250 [exp]	47.01	0.8514

Compare expression of checked genes

Potri.016G120466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.