Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 327 / 4e-98 AtRLP6 receptor like protein 6 (.1) AT2G33060 319 / 9e-97 AtRLP27 receptor like protein 27 (.1) AT2G33050 305 / 1e-91 AtRLP26 receptor like protein 26 (.1) AT5G40170 303 / 3e-91 AtRLP54 receptor like protein 54 (.1) AT4G13880 288 / 5e-86 AtRLP48 receptor like protein 48 (.1) AT2G33020 285 / 6e-84 AtRLP24 receptor like protein 24 (.1) AT3G05660 282 / 1e-82 AtRLP33 receptor like protein 33 (.1) AT3G24900 279 / 2e-81 AtRLP39 receptor like protein 39 (.1) AT3G25010 278 / 5e-81 AtRLP41 receptor like protein 41 (.1) AT3G25020 277 / 9e-81 AtRLP42 receptor like protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 1102 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 472 / 2e-152 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G389100 [exp] 407 / 3e-128 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G437700 [exp] 395 / 1e-123 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G126900 [exp] 391 / 3e-122 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127101 [exp] 367 / 5e-113 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 360 / 1e-110 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G104600 [exp] 337 / 1e-100 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.001G400500 [exp] 331 / 1e-100 AT1G45616 463 / 2e-148 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 670 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 609 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 592 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016402 [exp] 508 / 1e-170 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 492 / 4e-165 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004310 [exp] 479 / 2e-157 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10002214 [exp] 456 / 1e-152 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10006825 [exp] 467 / 2e-150 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004313 [exp] 449 / 2e-146 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10003387 [exp] 365 / 6e-112 AT1G47890 394 / 3e-120 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G120532.2 pacid=42809574 polypeptide=Potri.016G120532.2.p locus=Potri.016G120532 ID=Potri.016G120532.2.v4.1 annot-version=v4.1 ATGTTCAACTGCTATCTTTCAGGCCCTCTTGATGCTTCCCTTGCAAAGCTTCAGTCTCTTTCAATAATTCGTTTGAGCAGTAATAATTTGTCTTCTCCAG TTCCAGAATTCCTTGCAAATTACTCGAAATTGACTGCCTTGCAGCTTAGCTCTTGCCAGTTGAACGGAATATTTCCACAAGCTATATTCCAGGTACCAAC ACTAGAGATCCTTGACTTATCAGACAACAAATTCCTTCAGGGTTCTTTTCCGGAGTTCCATCAGAATCTCTCTCTTCAGACCCTCCTTCTCAGTAACACA AATTTTTCGGGAACATTACCACAGTCCATTGGTGAACTCCAGAAATTATCCAGAATAGAGCTAGTGGGTGAGATTCCATCCAGTCACTGGGAAGGCCTTC GAAGCCTCACCCATGTTGATTTAGGGTACAATGCATTCAACGGGAGCATCCCCTCATCTTTGTTTGCAATCCCGTCGCTGCAGAAGATACAGCTTTCCAA CAACAGATTTGGGGGACAGATTCCTGAGTTTCCAAACGTGTCTTCCTCTCTTTTGGATACCCTGGATTTGAGCAGCAACAACTTATTAGAAGGTTCTATT CCCAGTTCTGTCTTTGGTCTTGCAAAACTCAATGTCCTTGAACTTTCATCCAATAAGCTCAATGGCACGTTGCAATTACATTGGATTCAGAAACTTCTCA ATCTCACCACACTTGGCCTCTCATACAACAACTTGAGAGTTAATGCAAGTGGTGGCAATTCCAACATCTCTTCCCTTCCCCAAATCAAGAAACTAAGATT GGCTTCTTGCGACCTGGGAATGTTTCCAGATCTAAGGAACCAATCAAAACTCTTCCATTTAGACCTTTCAGACAACCAAATTACTGGGCCGGTACCTGGT TGGATTTCAGAACTTAGTCTTCTTCAATATCTGAATCTTTCACGCAATCTTCTGGTTGATCTAGAAAGACCTTTGTCTCTTCTTGGTCTTAGCATCTTAG ACCTGCATCATAACCAGCTCCAAGGGAGCATTCCAGTTCCTCCATCATTTATTACCTATGTGGATTACTCAAGCAATAATTTTTCTTCCTCCATCCCCCC TAACATCGGTAATTACTTCAACTTTACCTTTTTCTTCTCCCTTTCAAATAATCACCTTATCGGAGCAATACCGCAATCGATATGCAGTTCCGAATGGCTA CAAGTTCTTGACTTGTCTAACAACAGTTTGAGTGGAGCAATACCATCCTGTTTAATTGAGAAGATTAAGACTCTTCGTGTTCTAAATTTAAGGAGAAACA ACTTCGATGGAATTATTCCTGATAAATTTCCAAGAAGCTGTGAATTGAAGACTCTGGATCTGAGTGGAAACAACTTGCAAGGGCAAGTTCCAAAATCTCT GGCAAATTGCACAATGTTAGAGGTCTTAGACCTTGGGAACAATCAAATCAATGACAGCTTCCCGTGTCTTCTTAAGAACATATCGAGTTTTCGTGTCCTT GTTCTGCGAAACAACATGTTCTCCGGGCCTATTGGATGTCCACAAATCGAAGGCACTTGGCCAAGGCTTCAGATCGTCGACCTAGCTTTCAACCATTTCA GAGGAAATCTACCAGATATTTGCTTGAAAACGTGGGAAGGAATGATGGAAGGTGGAAACAGAAGCCTTGAGCACATAAGATATGATCCCCTGAAGCTGAC GAATGGACTGTATTATCAAGATTCAATAACAGTCACACTCAAGGGTCTCGAGCTGGAGCTGGTGAAGATACCAACTGTCTTTACCTCTGCTGACTTTTCA AGCAACAACTTTGAAGGGCCAATACCAGATGCCATAGGACAGTTCAATGTCCTCTATGTTCTCAACTTGTCACATAATGTACTCACAGGCCAAATTCCAT CATCTTTAGGCAACCTGTCACAGCTCGAGTCCTTAGACCTCTCATCTAACCAATTGTCGGGACAAATCCCAGCACAGCTAACAAGCCTGACATTCCTTTC AGTCCTGAATCTCTCATATAACAGGCTAGTGGGACGGATCCCAACAGGCAATCAATTCCTGACGTTCTCGTCCGATTCCTTTGAAGGTAACCAAGGATTA TGCGGGCCTCCGTTAATTTTATCGTGCAACTATACCTTTGTATCAAATTCTGGTATAGACATTGACTGGGTCTTCTTAAGTGCTGGATTGGGATATATCT TCGGGTCGGGCATTATTGTTCTACCTCTTATGTTTTGCAAGAGATGGAGAACATGGTACTACACACATGTTAATCGTGTAATTTTCAGGATCTTCCCTCA ACTAGAAAAAAGAAGAAAGAATCTTGGCAGAAGAGCTCAAAGAAATAGAAGAAGGCAGTAA
AA sequence Show only first row Show all	>Potri.016G120532.2 pacid=42809574 polypeptide=Potri.016G120532.2.p locus=Potri.016G120532 ID=Potri.016G120532.2.v4.1 annot-version=v4.1 MFNCYLSGPLDASLAKLQSLSIIRLSSNNLSSPVPEFLANYSKLTALQLSSCQLNGIFPQAIFQVPTLEILDLSDNKFLQGSFPEFHQNLSLQTLLLSNT NFSGTLPQSIGELQKLSRIELVGEIPSSHWEGLRSLTHVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFGGQIPEFPNVSSSLLDTLDLSSNNLLEGSI PSSVFGLAKLNVLELSSNKLNGTLQLHWIQKLLNLTTLGLSYNNLRVNASGGNSNISSLPQIKKLRLASCDLGMFPDLRNQSKLFHLDLSDNQITGPVPG WISELSLLQYLNLSRNLLVDLERPLSLLGLSILDLHHNQLQGSIPVPPSFITYVDYSSNNFSSSIPPNIGNYFNFTFFFSLSNNHLIGAIPQSICSSEWL QVLDLSNNSLSGAIPSCLIEKIKTLRVLNLRRNNFDGIIPDKFPRSCELKTLDLSGNNLQGQVPKSLANCTMLEVLDLGNNQINDSFPCLLKNISSFRVL VLRNNMFSGPIGCPQIEGTWPRLQIVDLAFNHFRGNLPDICLKTWEGMMEGGNRSLEHIRYDPLKLTNGLYYQDSITVTLKGLELELVKIPTVFTSADFS SNNFEGPIPDAIGQFNVLYVLNLSHNVLTGQIPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQFLTFSSDSFEGNQGL CGPPLILSCNYTFVSNSGIDIDWVFLSAGLGYIFGSGIIVLPLMFCKRWRTWYYTHVNRVIFRIFPQLEKRRKNLGRRAQRNRRRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G120532 [exp]	0	1
AT5G17640			Protein of unknown function (D...		Potri.013G071000 [exp]	1.00	0.8302
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.001G285900 [exp]	1.41	0.7941
AT4G08250	GRAS		GRAS family transcription fact...		Potri.009G075500 [exp]	2.44	0.7858
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	4.24	0.7671
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	4.47	0.7817
AT1G21360		GLTP2	glycolipid transfer protein 2 ...		Potri.002G071100 [exp]	8.94	0.7500
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	16.91	0.7039
					Potri.001G168400 [exp]	17.88	0.7221
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	32.75	0.6915
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.004G007700 [exp]	40.38	0.5900

Compare expression of checked genes

Potri.016G120532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.