Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 439 / 2e-136 AtRLP7 receptor like protein 7 (.1) AT1G45616 425 / 2e-131 AtRLP6 receptor like protein 6 (.1) AT3G11010 418 / 7e-130 AtRLP34 receptor like protein 34 (.1) AT3G11080 410 / 2e-126 AtRLP35 receptor like protein 35 (.1) AT2G15080 407 / 1e-124 AtRLP19 receptor like protein 19 (.1.2) AT5G27060 403 / 2e-123 AtRLP53 receptor like protein 53 (.1) AT3G05660 389 / 3e-119 AtRLP33 receptor like protein 33 (.1) AT4G13920 373 / 4e-113 AtRLP50 receptor like protein 50 (.1) AT3G05650 369 / 9e-112 AtRLP32 receptor like protein 32 (.1) AT2G33060 367 / 2e-111 AtRLP27 receptor like protein 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 1082 / 0 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 737 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 614 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G389100 [exp] 562 / 0 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 554 / 3e-180 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.016G127000 [exp] 526 / 2e-169 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 523 / 3e-168 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.011G021400 [exp] 489 / 4e-155 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.012G027600 [exp] 466 / 3e-145 AT1G71400 395 / 1e-121 receptor like protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 981 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 915 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 904 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003387 [exp] 735 / 0 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 598 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10002214 [exp] 548 / 0 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10016402 [exp] 535 / 6e-177 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 511 / 2e-168 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004310 [exp] 504 / 7e-163 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10002215 [exp] 469 / 6e-154 AT4G20140 202 / 7e-56 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G120600.1 pacid=42810035 polypeptide=Potri.016G120600.1.p locus=Potri.016G120600 ID=Potri.016G120600.1.v4.1 annot-version=v4.1 ATGAAAATTCCTCTCTTTACATGGCTTTTCTTGATACCCTTTTTGACAATATTCTTTGGTGTCAATGTGTGTTTGGTTTCTGGCCAGTGCCGGAAAGATC AGCAATCCTTGTTACTCCAATTAAAGAACACTCTCGTGTTTGATCAATCTGTATCTGCAAAACTAGTGAAGTGGAATTCAACCCCAGATTGCTGCGACTG GCCAGGCATAACTTGCGATGAGGGTAGTGGTCGTGTTATCAGCCTGGACTTGAGCTCCGAACGAATCACTGGTGGACTTGGCGATTCAAGCGGGCTTTAC AGACTTCAATTTCTTCAGAGTCTAAACTTGTCTTTCAACAGCTTCAGCACAGCTCTGCCAGTCGGGTTTGCCAACCTCACGGATTTGATTTCACTGAATT TGTCCAATGCTGGCTTTACAGGCCAGATTCCAAATGATTTCTCAAAGCTGACAAAGTTGGTCAGTCTTGATTTGTCTGCCCTTTCCTTCCCTGGAAGTCC TGCACTGAAACTCGAGCAGCCTAATTTTGCAACATTGGTTCAAAATCTCACACACCTAACAGAGCTCCTTCTTGATGGTGTTAATATATCAGCACACGGC AATGACTGGTGCAAGGCCTTATCATCGTCACTGCCTAATCTAAAAGTGCTGAGCATGTCCAACTGCTATCTCTCAGGCCCTCTTGATGCTTCCCTTGCAA AGCTTCAGTCTCTTTCAATAATTCGTTTGAGCGGTAATAATTTGTCTACTCCAGTTCCAGAATTCCTTGCAAATTACTCGAAATTGACTGCCTTGCAGCT CAGCTCTTGCCAGTTGAACGGTATATTTCCACAAGCTATATTCCAGGTACCAACACTAGAGATCCTTGACTTACAATACAACAAATTCCTTCAGGGTTCT TTTCCGGAGTTCCATCAGAATCTCTCTCTTCGGACCCTCCTGCTCAGTAACACAAATTTTTCAGGAACATTACCACAGTCCATTGGTGAACTCCAGAAAT TATCCAGAATAGAGCTAGCGGGTAACAATTTCACTGGACCAATTCCAAATTCAATGGCTAATCTCACCCAGCTGTTTTATCTGGACTTGTTATCCAACAA GTTCACAGGCACACTCCCATCATTCCGCAAGTCCAAGAATCTCACCTATGTAGATGTCTCTCACAATCAACTAAAAGGTGAGATTCCATCCGGTCACTGG GAAGGCCTTCGAAGCCTCACCTATGTTGATTTAGGGTACAATGCATTCAACGGGAGCATCCCCTCATCGCTGTTTGCAATCCCGTCGCTGCAGAAGATAC AGCTTTCCAACAACCGATTTGGGGGACAGATTCCTGAGTTTCCAAACGTGTCTTCCTCTCTTTTGGATACCCTGGATTTGAGCAGCAACAAGTTAGAAGG TCCTATTCCCAGTTCTGTCTTTGGTCTTGCAAAACTCAATGTCCTTGAACTTTCATCCAATATGCTCAACGACACCTTGCAATTACATTGGATTCAGAAA CTTCCCAATCTCACCACACTTGGCCTCTCATACAACAACTTGACCGTGAAATCAAGTGGTGGCAATTCCAACATGTCTTCCCTTCCCCAAATCAAGAAAC TAAGATTAGCTTCTTGCGACCTGGGAATGTTTCCAGATCTAAGGAACCAATCAAAACTCTTCCATTTAGACCTTTCAGACAACCAAATTACTGGGCCGGT ACCTGGTTGGATTTCAGAACTTATTCTTCTTCAATATCTGAATCTTTCACGCAATCTTCTGGTTGATCTAGAAAGACCTTTGTCTCTTCCTGGTCTTAGC ATCTTAGACCTGCATCATAACCAGCTCCAAGGGAGCATTCCAGTTCCTCCATCATATATTACCTATGTGGATTACTCAAGCAATAAATTTTCTTCCTTCA TCCCCCCTAACATTGGTAATTACTTCAACTTTACCCTTTTCTTCTCCCTTTCAAATAATCACCTTACCGGAGAAATACCGCAATCGATATGCAATACCGA ATGGCTACAAGTTCTTGACTTGTCTAACAACAGTTTGAGTGGAGCAATACCATCCTGTTTAATTGATAAGATTAAGACTCTTCGTGTTCTAAATTTAAGG AGAAACAACTTCGATGGAATTATTCCTGATAAATTTCCAAGAAGCTGTGAATTGAAGACTCTGGATCTGAGTGGAAACAACTTGCAAGGGCAGGTTCCAA AATCTCTGGCAAATTGCACTATGTTAGAGGTCTTAGACCTTGGGAACAATCAAATCAATGACAGCTTCCCGTGTCTTCTTAAGAGCATATCGAGTTTTCG TGTCCTTGTTCTGCGAAACAACATGTTCTCAGGGCATATTGGATGTCCACAAATCGAAGGCACTTGGCCAAGGCTTCAGATCGTCGACCTAGCTTTCAAC CATTTCATAGGAAATCTATCAGATATTTGCTTGAAAACGTGGGAAGGAATGATGGAAGGTGGAAACAGAAGCCTTGACCACATAAGATATGATCCCCTGC AGCTGACGAATGGACTGTATTATCAAGATTCAATAACAGTCACAGTCAAGGGTCTCGAGCTGGAGCTGGTGAAGATATTAACTGTCTTTACCTCTGCTGA CTTTTCAAGCAACAACTTTGAAGGGCCAATACCAGATGCCATAGGAAAGTTCAATGCCCTCTATGTTCTCAACTTGTCACATAATGTACTCACAGGCCAA ATTCCATCATCTTTAGGCAACCTGTCACAGCTCGAGTCCTTAGATCTCTCATCTAACCAATTGTCTGGACAAATCCCAGCACAGCTAACAAGCCTGACAT TCCTTTCAGTCCTGAATCTCTCATATAACAGGCTAGTGGGACGGATCCCAACAGGCAATCAATTCCTGACGTTCTCATCCGATTCCTTTGAAGGTAACCA AGGATTATGCGGGCCTCCGTTAAAATTAGCATGCTCCAATACCAATGAATCAAATTCTACACGGGGAAGCAACCAAAGAAAAGAATTTGATTGGCAGTTC ATAGTCCCTGGCCTGGGGTTCGGGCTAGGATCAGGAATTGTGGTGGCACCTCTCTTGTTCTCCAAGAAAATAAACAAATGTTACGACGACCGTATAGATA AAATCCTTTTGGTGCTTCTTCCAATGTTGGGATTCAGATACTACGCGAGAGGTGATTGGAGGATCGAGCCTGAAGAAACTTCTGAAGAAGAAGATAACAC AGATGCTGCTGCTGCTGCTGATGATGATGATGAAGTGGAAGTGGAAGTGGACAATGAAGATTACTTTGGAGGAAGGTACTGTGTGTTCTGCACAAAACTT GACATCACAATTAAAAAGGTCATTCATGACCCAAAATGTGTTTGTTATCAGTCACCACCGATATCTTCTTCCTCTTCTTCCTTCTCATCTTTTTCGCCAT CTTGA
AA sequence Show only first row Show all	>Potri.016G120600.1 pacid=42810035 polypeptide=Potri.016G120600.1.p locus=Potri.016G120600 ID=Potri.016G120600.1.v4.1 annot-version=v4.1 MKIPLFTWLFLIPFLTIFFGVNVCLVSGQCRKDQQSLLLQLKNTLVFDQSVSAKLVKWNSTPDCCDWPGITCDEGSGRVISLDLSSERITGGLGDSSGLY RLQFLQSLNLSFNSFSTALPVGFANLTDLISLNLSNAGFTGQIPNDFSKLTKLVSLDLSALSFPGSPALKLEQPNFATLVQNLTHLTELLLDGVNISAHG NDWCKALSSSLPNLKVLSMSNCYLSGPLDASLAKLQSLSIIRLSGNNLSTPVPEFLANYSKLTALQLSSCQLNGIFPQAIFQVPTLEILDLQYNKFLQGS FPEFHQNLSLRTLLLSNTNFSGTLPQSIGELQKLSRIELAGNNFTGPIPNSMANLTQLFYLDLLSNKFTGTLPSFRKSKNLTYVDVSHNQLKGEIPSGHW EGLRSLTYVDLGYNAFNGSIPSSLFAIPSLQKIQLSNNRFGGQIPEFPNVSSSLLDTLDLSSNKLEGPIPSSVFGLAKLNVLELSSNMLNDTLQLHWIQK LPNLTTLGLSYNNLTVKSSGGNSNMSSLPQIKKLRLASCDLGMFPDLRNQSKLFHLDLSDNQITGPVPGWISELILLQYLNLSRNLLVDLERPLSLPGLS ILDLHHNQLQGSIPVPPSYITYVDYSSNKFSSFIPPNIGNYFNFTLFFSLSNNHLTGEIPQSICNTEWLQVLDLSNNSLSGAIPSCLIDKIKTLRVLNLR RNNFDGIIPDKFPRSCELKTLDLSGNNLQGQVPKSLANCTMLEVLDLGNNQINDSFPCLLKSISSFRVLVLRNNMFSGHIGCPQIEGTWPRLQIVDLAFN HFIGNLSDICLKTWEGMMEGGNRSLDHIRYDPLQLTNGLYYQDSITVTVKGLELELVKILTVFTSADFSSNNFEGPIPDAIGKFNALYVLNLSHNVLTGQ IPSSLGNLSQLESLDLSSNQLSGQIPAQLTSLTFLSVLNLSYNRLVGRIPTGNQFLTFSSDSFEGNQGLCGPPLKLACSNTNESNSTRGSNQRKEFDWQF IVPGLGFGLGSGIVVAPLLFSKKINKCYDDRIDKILLVLLPMLGFRYYARGDWRIEPEETSEEEDNTDAAAAADDDDEVEVEVDNEDYFGGRYCVFCTKL DITIKKVIHDPKCVCYQSPPISSSSSSFSSFSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120600 [exp]	0	1
AT2G03810			18S pre-ribosomal assembly pro...		Potri.008G111800 [exp]	1.41	0.8677
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.002G024700 [exp]	3.60	0.8405
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.006G115000 [exp]	4.58	0.8683
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414200 [exp]	5.19	0.8464
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.002G114500 [exp]	7.34	0.8533
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270404 [exp]	8.24	0.8599
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270500 [exp]	8.36	0.8576
AT5G38210			Protein kinase family protein ...		Potri.017G118100 [exp]	9.16	0.8614
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	9.38	0.8444	LON.1
AT1G23220			Dynein light chain type 1 fami...		Potri.011G120400 [exp]	10.39	0.8118

Compare expression of checked genes

Potri.016G120600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.