Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61520 570 / 0 Major facilitator superfamily protein (.1.2) AT1G11260 539 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19930 532 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT4G21480 519 / 0 STP12 sugar transporter protein 12 (.1) AT4G02050 515 / 6e-180 STP7 sugar transporter protein 7 (.1) AT3G19940 514 / 1e-179 Major facilitator superfamily protein (.1) AT5G26340 511 / 3e-178 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT5G23270 505 / 6e-176 ATSTP11, STP11 sugar transporter 11 (.1) AT1G50310 498 / 3e-173 ATSTP9 sugar transporter 9 (.1) AT1G34580 462 / 4e-159 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233500 [exp] 734 / 0 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G072800 [exp] 555 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 548 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 544 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 535 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 535 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 515 / 1e-179 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 509 / 1e-177 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.006G189100 [exp] 494 / 1e-171 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009656 [exp] 667 / 0 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10013441 [exp] 560 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 523 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10010534 [exp] 514 / 2e-179 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 513 / 5e-179 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002597 [exp] 507 / 3e-177 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10021924 [exp] 501 / 9e-174 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 483 / 2e-167 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10040991 [exp] 481 / 3e-166 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10022421 [exp] 462 / 7e-159 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.016G120700.1 pacid=42809224 polypeptide=Potri.016G120700.1.p locus=Potri.016G120700 ID=Potri.016G120700.1.v4.1 annot-version=v4.1 ATGGCAGTGGAATTAAGCATAAGAAGTGATCAAGGAGGGCTATGCAATGGCAAGATGACATGGTTTGTTGTTTTGTCTTGTATGATGGCTGCCATGGGAG GAGTCATTTTCGGCTATGATATTGGAATTACAGGTGGTGTTACCTCAATGGAACCATTTCTGGAGAAATTTTTCCCAAAAGTGTACAGAAAGATGAAGGA AGACACAGAAATTAGCAACTACTGCAAATTTGATAGCCAATTGTTGACCTCCTTCACATCCTCAATGTATGTTGCTGGTTTTATTGCTTCATTCTTTGCC TCATCGATAACCAAGGCATTTGGACGCAAGCCATCAATTCTTTTAGGAGGCGCTGCCTTCCTTGCTGGTGCTGCCCTTGGTGGTGCAGCATTTAACGTTT ATATGCTAATATTTGGTCGGGTCTTGCTTGGAGTTGGTGTTGGTTTTGCTAACCAGGCAGTCCCACTCTATCTCTCAGAAATGGCACCACCAAGATACAG AGGAGCAATTAACAATGGGTTCCAGTTTAGTATTGGCATCGGGGCACTCTCTGCTAACCTCATAAACTATGGCACCGAAAAGATCAAAGGCGGTTGGGGC TGGCGAATCTCCCTAGCTTTGGCAGCAGTCCCGGCTACAATCCTTACACTAGGTGCAGTTTTCCTGCCAGAAACACCAAACAGCCTCATTCAGCTCACTG ATGACACTGAAAGAGCTAAGCTAATGCTACAACGGGTCCGAGGAACTGAAGATGTTCAAGCAGAACTTGATGATCTCATCAAAGCTAGCTCAATCTCAAA AACCGTTGAGCACCCATTTAAGAAAATCATAAAAAGGAAGTATAGGCCTCAACTAGTAATGGCAATAGCCATACCATTTTTTCAGCAAGTTACAGGAATC AATGTGATTGCATTTTATGCTCCTATACTTTTCAGGACAATAGGACTAGGCGAAAGCGCATCTCTCATGTCTTCAGTTGTGACTGGGATTGTGGGTACTG GATCAACATTTATATCAATGCTTGTAGTCGACAAACTTGGCAGAAGAGCATTGTTTATATTTGGTGGTGTGCAGATGTTAGTGTCACAAATAATGGTGGG AGGAATAATGGCAGCTCAGCTAGGTGATCATGGTGGTATAGGCGGAGGATATGCTTATGTTGTGTTGATTTTGATTTGTATTTACGTAGCTGGGTTTAGC TGGTCATGGGGTCCATTAGGATGGTTAGTTCCTAGTGAGATTTTTCCGCTGGAAATTCGATCAGCAGGGCAAAGTATTGTGGTTGCTGTAAGCTTTCTCT TCACTTTCATTGTTGCCCAAACATTTCTAGCCATGCTTTGCCATTTCAAGTCTGGAATTTTCTTTTTCTTTGGGGGCTGGGTTGTAGTGATGACTGCCTT TGTATACTATTTTCTGCCGGAGACCAAGAATACACCAATCGAGAAAATGGATAGGGTGTGGAGGGAGCACGGGTTTTGGAACAAAATTGTGGGGGAAATG GATGAACAGACTAAAATTGAAGCTGCATGA
AA sequence Show only first row Show all	>Potri.016G120700.1 pacid=42809224 polypeptide=Potri.016G120700.1.p locus=Potri.016G120700 ID=Potri.016G120700.1.v4.1 annot-version=v4.1 MAVELSIRSDQGGLCNGKMTWFVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLEKFFPKVYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFA SSITKAFGRKPSILLGGAAFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSIGIGALSANLINYGTEKIKGGWG WRISLALAAVPATILTLGAVFLPETPNSLIQLTDDTERAKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAIAIPFFQQVTGI NVIAFYAPILFRTIGLGESASLMSSVVTGIVGTGSTFISMLVVDKLGRRALFIFGGVQMLVSQIMVGGIMAAQLGDHGGIGGGYAYVVLILICIYVAGFS WSWGPLGWLVPSEIFPLEIRSAGQSIVVAVSFLFTFIVAQTFLAMLCHFKSGIFFFFGGWVVVMTAFVYYFLPETKNTPIEKMDRVWREHGFWNKIVGEM DEQTKIEAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61520			Major facilitator superfamily ...		Potri.016G120700 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G124100 [exp]	2.00	0.8429
					Potri.003G153266 [exp]	2.44	0.8600
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.018G094200 [exp]	2.44	0.8655	4CL1.4
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019700 [exp]	4.47	0.8333
					Potri.003G153332 [exp]	5.91	0.8216
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Potri.014G103700 [exp]	6.92	0.7921
AT1G47990		ATGA2OX4	Arabidopsis thaliana gibberell...		Potri.010G149700 [exp]	23.47	0.7671	GA2ox5,Pt-GA2.3
AT3G02100			UDP-Glycosyltransferase superf...		Potri.013G022800 [exp]	23.66	0.7941
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G020100 [exp]	33.36	0.7489
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.014G155100 [exp]	35.24	0.8303

Compare expression of checked genes

Potri.016G120700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.