Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53580 491 / 4e-175 diaminopimelate epimerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G102700 [exp] 604 / 0 AT3G53580 488 / 5e-174 diaminopimelate epimerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025303 [exp] 494 / 6e-176 AT3G53580 545 / 0.0 diaminopimelate epimerase family protein (.1) Lus10024429 [exp] 486 / 3e-160 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0288 [poplar] [flax] DAP_epimerase PF01678 [poplar] [flax] DAP_epimerase Diaminopimelate epimerase
Representative CDS sequence Show only first row Show all	>Potri.016G120900.1 pacid=42809673 polypeptide=Potri.016G120900.1.p locus=Potri.016G120900 ID=Potri.016G120900.1.v4.1 annot-version=v4.1 ATGGCCGAAGCCATTGCAACCGCCGCCACCACATCCCTCTCTGTAAAACCCTCAAATCTTCATTCCCAACTCTTCCTCTCTTCCACTTCTTTCCCTATTA TTCGATTGAACTCTCTCAAAAACCCAAACTTTCGGCCACTGGTAGTTTCCTCAACGAGCATCGAGTCAGCAGCCACCCAGAAACCTTCATCAAAAACCTC CTTTCTTGATCAAAGAGAAGGCAGCAGATACCTTCACTTTGTCAAATACCACGGCCTCGGCAATGATTTCATTTTGGTTGATAACAGGGACTCTAGTGAA CCCAAGATAACTCCAGAGCAAGCAGCGAAGTTATGTGATAGGAATTTTGGGATTGGGGCAGATGGGGTGATTTTTGCATTGCCAGGGATTAATGGGACTG ATTATACAATGAGGATATTTAATTCTGATGGGAGTGAGCCGGAGATGTGTGGAAATGGGGTGCGGTGTTTTGCAAGGTTTATTGCTGAGATAGAGAATTT ACATGGGAAGAAACTGAGTTTTTCTGTGCATACTGGTGCTGGCTTGATTGTTCCTGAGATTCAAGAAGATGGGAAAGTTAAGGTTGATATGGGAGAGCCG GTGCTTAAAGCAGCTGATGTGCCGACGAAATTGGCCGCGAATAAGAATGATGCTGTTGTTAAATCGGAATTGGTTGTGGATGGAGTGACTTGGAATGTGA CTTGTGTTAGCATGGGGAATCCTCATTGTGTCACTTTTGGCGTCAAAGGAGGGCAGGATTTGCAGGTTGATTCATTAAATTTGGCTCAAATTGGTCCTAA GTTCGAACATCATGAGGTGTTCCCAGCACGAACAAACACTGAGTTTGTGCAAGTCTGTTCCCCTTCACATCTCAAAATGCGTGTATGGGAGCGTGGGGCA GGAGCAACACTAGCCTGTGGAACTGGGGCCTGCGCAACAGTTGTTGCGGCAGTTCTAGAGGGAAATGCTGGGAGGAATTGCACGGTTGATCTACCTGGAG GTCCACTGGAGATTGAGTGGAGGGAGGAAGACAACCATGTGTACATGACTGGCCCAGCTGAAATGGTGTTTGATGGATCAGTACCCCTACGATATCTCTT AGAATGA
AA sequence Show only first row Show all	>Potri.016G120900.1 pacid=42809673 polypeptide=Potri.016G120900.1.p locus=Potri.016G120900 ID=Potri.016G120900.1.v4.1 annot-version=v4.1 MAEAIATAATTSLSVKPSNLHSQLFLSSTSFPIIRLNSLKNPNFRPLVVSSTSIESAATQKPSSKTSFLDQREGSRYLHFVKYHGLGNDFILVDNRDSSE PKITPEQAAKLCDRNFGIGADGVIFALPGINGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAEIENLHGKKLSFSVHTGAGLIVPEIQEDGKVKVDMGEP VLKAADVPTKLAANKNDAVVKSELVVDGVTWNVTCVSMGNPHCVTFGVKGGQDLQVDSLNLAQIGPKFEHHEVFPARTNTEFVQVCSPSHLKMRVWERGA GATLACGTGACATVVAAVLEGNAGRNCTVDLPGGPLEIEWREEDNHVYMTGPAEMVFDGSVPLRYLLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	0	1
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	1.41	0.9077
AT1G32730			unknown protein		Potri.001G148500 [exp]	1.73	0.9043
AT3G44190			FAD/NAD(P)-binding oxidoreduct...		Potri.001G217800 [exp]	4.89	0.8728
AT4G20020			unknown protein		Potri.003G015100 [exp]	5.09	0.9073
AT4G36580			AAA-type ATPase family protein...		Potri.007G023900 [exp]	5.29	0.8995
AT2G18410			unknown protein		Potri.004G099000 [exp]	6.32	0.8616
AT5G62290			nucleotide-sensitive chloride ...		Potri.012G128500 [exp]	9.79	0.8837
AT3G53940			Mitochondrial substrate carrie...		Potri.006G091900 [exp]	11.74	0.8594
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	11.83	0.8667	Pt-ATTIM23.1
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.018G020700 [exp]	17.72	0.7993

Compare expression of checked genes

Potri.016G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.