Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80930 876 / 0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G52325 101 / 8e-25 Initiation factor eIF-4 gamma, MA3 (.1) AT5G17930 71 / 3e-12 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G061400 [exp] 70 / 6e-12 AT5G17930 735 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003392 [exp] 453 / 3e-147 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10002210 [exp] 448 / 4e-145 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 244 / 2e-74 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10019865 [exp] 63 / 9e-10 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10014048 [exp] 62 / 3e-09 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02847 [poplar] [flax] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Potri.016G121100.13 pacid=42809212 polypeptide=Potri.016G121100.13.p locus=Potri.016G121100 ID=Potri.016G121100.13.v4.1 annot-version=v4.1 ATGCCGAGAAGATACAGCAGTAGCAGCCGTGAATCTAGTGATGAAGAGAGAGACAGACGTCGTCTTCGTGATAGTAAAAGAGATTCAAAATCAGACAGTC ATCGTATTCGGGGCGGCCGTGGAGATGAGAGTGATGAATCGTTAGATAATAAGAGACAGGATAAGCGCGACGAACGTAGTAGGCGTCGCGATAGGGCTGG AAGTGATGAATCATTAGAGAAAAAACAAGATAAGCGCGGTGAACGGAGTAAGCTTCTCGATAGGGCTGGAAGTGATGAATCATTAGAGAAAAAACAAGAT AAGCGCGGTGAAAGGAGTAAGCTTATCGATAGGGCTGGAAGTGATGAATCATTAGAGAAAAAACAAGATAAGCGCGGTGAAAGGAGTAAGCTTATCGATA GGGCTAGAGATGAGGAGATATTTAGTCGAGAGAGGAAGGAAGTTAAGGAGAGTTCTGAGGAAGAAGGAGAGTTGGTGGAGAAAAATAGAAGTCATGAGGG GCGGCGAGAGAATCGGGAGAAGGAGAAGGAAAAGGAAAGGGTTAGTAGGAGTTCTGATGAAGAGGATGATAGGAGGAAGAAGAGGGAGAGGAGAGAAAGA GAGAGAAATGATCGGTTTGAGAATGGGCATAGAAGGAGAGAAATTGAGGATAGTTATAGAAGGAGGGACAGGCATGAAAGGCATCGGGCTTTAGATGATG AGGATGATAGTGGGGTGAGAACAAAATCGGAGCAAGATAGGAATAGGGATAGGAGGCGTATAGATAGAGATTATGATGATGGTGGTGATAGACGGAATGG GAGAGGTAAGGAGAGGAATAAGATGGGAAAAGAAGCAGAGAATTTGAAGGAGAAAGAGGAGGGTCGTAGCAGGACTGCTGAAGAGTCGAAACCTAGGAGA GAAATGGCAGTGGAAGAAGGAAATGGGGGTGCCGATGCTTCGATTTTGGGTAAGACCGGTGGGGTTTATATTCCTCCATTTAGGTTGGCGAGGATGATGA AAGAGGTTGAAGACAAAAGTAGTACTGAGTACCAAAGGCTGACTTGGGATGCACTACGTAAGAGTATTAATGGACTTGTGAACAAGGTTAATGCTTCTAA TATAAAGAATATCATCCCAGAACTGTTTTCCGAGAATTTGATACGGGGAAGGGGACTTTTTTGCCGGTCTTGTATGAAGTCACAGATGGCATCTTCAAGA TTCACTGATGTTTTTGCTGCACTGGTTGCTGTTGTCAACACCAAGTTCCCTGAGGTGGGTGATCTTCTGTTGAGAAGGATAGTTCTGCAGCTAAAGAGAG CCTTCAAACGGAATGACAAGCCTCAATTGTTAGCTGCTGTTAAATTTATAGCACATCTTGTAAACCAGCAAGTAGCTCATGAGATTATTGCTCTAGAACT CCTTGCTGTTTTGCTGGAAAATCCCACTGACGACAGTGTTGAGGTGGCTGTGGGGTTTGTCACAGAATGTGGATCAATGCTTCAGGATGTGTCGCCAAAA GGCTTAGATGGAGCTTTTGAGCGATTTCGTGGAATTCTTCATGAAGGAGAGATAGACAAGAGGGTTCAATTTTTAATTGAAGGCCTTTTTGCTATAAGAA AAGCGAAATTTCAGGGGTACCCTGCTGTTCGTCCAGAATTGGACCTTGTAGACCAGGAAGACCAGTTAACTCATGAGATATCTCTTTCAGAGGACATAGT TGCAGAGATCACTCTTGATGTCTTCAAACCAGATCCTAATTTCCTGGAGAATGAGAAGCGCTATGAAGAATTGAAGAAAAGCCTTCTTGGTGAGGAGTCT GAGGACGAAGATGGTTCTGATGCAGCTTCTGGTGATGAGGAGGATGACGATGACGATGACGAAGATGAATCCGAGGAAGAAGATGAAGAGCAGATGCGAA TAGATGATCAGACAGAAACAAACCTTATAAACCTTCGGAGAACAATCTATCTGACAATAATGTCCAGTGTAGATTTTGAGGAGGCTGGCCACAAACTACT GAAAATTAAACTAGAGCCGGGACAAGAGATGGAGCTGTGCATTATGCTCTTGGAATGCTGCAGTCAAGAGAGGACATATCTTCGTTATTACGGTCTTTTG GGGCAGCGATTCTGTATGATCAACAAAGTGCACCAGGAAAATTTTGAGAAGTCCTTTGTTCAACAGTACTCGATGATTCATCGTCTTGAAACAAATAAGC TGCGCAATGTGGCCAAGTTTTTTGCCCATTTACTTGGCACGGATGCATTGCCTTGGCATGTTTTAGCCTACATACGATTGACTGAGGAGGATACAACTTC TTCATCCCGTATTTTTATCAAGATTCTCTTCCAGGAATTGTCAGAGCATCTTGGTATACGAACACTGAATGAGCGCCTCACAGATCCAACCATGCGAGAC TCATTTGATTCAATTTTTCCAAAAGATAACCCCAAGAACACGAGGTTTGCCATCAACTTCTTCACATCAATTGGGCTTGGTGGTATAACAGAAAATTTGC GCGAGTACTTGAAGAATATGCCTAGGATGATCATGCAACAACAAGAACAATTGCCAGAATCAGAATCTGGATCAGATGACGAATCTGAAAGTTCTGGTTC ATCTGATTCAGATTCCAGCAGTTCCGAATCAGAGTCAGATTCACCAAGTTCTGATGAGGATGAAAGACGTCGTAGGAAGCAACACAGGAGTAGTGAAAGG GATGAAAGACACAAGAAGCGACACAGGAGCAGTGAAAGGGATGAAAGACACAGGAAGCGACGCAGGAGTAGTGAAAGGGATGAAAGACACAGGAAACGAT AA
AA sequence Show only first row Show all	>Potri.016G121100.13 pacid=42809212 polypeptide=Potri.016G121100.13.p locus=Potri.016G121100 ID=Potri.016G121100.13.v4.1 annot-version=v4.1 MPRRYSSSSRESSDEERDRRRLRDSKRDSKSDSHRIRGGRGDESDESLDNKRQDKRDERSRRRDRAGSDESLEKKQDKRGERSKLLDRAGSDESLEKKQD KRGERSKLIDRAGSDESLEKKQDKRGERSKLIDRARDEEIFSRERKEVKESSEEEGELVEKNRSHEGRRENREKEKEKERVSRSSDEEDDRRKKRERRER ERNDRFENGHRRREIEDSYRRRDRHERHRALDDEDDSGVRTKSEQDRNRDRRRIDRDYDDGGDRRNGRGKERNKMGKEAENLKEKEEGRSRTAEESKPRR EMAVEEGNGGADASILGKTGGVYIPPFRLARMMKEVEDKSSTEYQRLTWDALRKSINGLVNKVNASNIKNIIPELFSENLIRGRGLFCRSCMKSQMASSR FTDVFAALVAVVNTKFPEVGDLLLRRIVLQLKRAFKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAVLLENPTDDSVEVAVGFVTECGSMLQDVSPK GLDGAFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDQEDQLTHEISLSEDIVAEITLDVFKPDPNFLENEKRYEELKKSLLGEES EDEDGSDAASGDEEDDDDDDEDESEEEDEEQMRIDDQTETNLINLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLL GQRFCMINKVHQENFEKSFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRTLNERLTDPTMRD SFDSIFPKDNPKNTRFAINFFTSIGLGGITENLREYLKNMPRMIMQQQEQLPESESGSDDESESSGSSDSDSSSSESESDSPSSDEDERRRRKQHRSSER DERHKKRHRSSERDERHRKRRRSSERDERHRKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	0	1
AT3G49601			unknown protein		Potri.006G233000 [exp]	1.00	0.9362
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	1.41	0.9096
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.007G027500 [exp]	3.00	0.8969
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	3.46	0.8882
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	4.89	0.9037
AT3G51650			unknown protein		Potri.016G133700 [exp]	5.74	0.8896
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	5.74	0.9042
					Potri.008G016200 [exp]	6.00	0.9006
AT4G33740			unknown protein		Potri.009G083900 [exp]	6.48	0.8798
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	6.92	0.8982

Compare expression of checked genes

Potri.016G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.