Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51780 218 / 1e-70 ATBAG4 BCL-2-associated athanogene 4 (.1) AT5G52060 118 / 2e-31 ATBAG1 BCL-2-associated athanogene 1 (.1) AT5G07220 109 / 2e-28 ATBAG3 BCL-2-associated athanogene 3 (.1) AT5G62100 105 / 5e-27 ATBAG2 BCL-2-associated athanogene 2 (.1.2.3) AT5G14360 67 / 1e-13 Ubiquitin-like superfamily protein (.1) AT5G40630 66 / 4e-13 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G279500 [exp] 226 / 7e-74 AT3G51780 210 / 2e-67 BCL-2-associated athanogene 4 (.1) Potri.009G074300 [exp] 205 / 7e-66 AT3G51780 196 / 4e-62 BCL-2-associated athanogene 4 (.1) Potri.001G358200 [exp] 132 / 2e-37 AT5G07220 207 / 9e-66 BCL-2-associated athanogene 3 (.1) Potri.012G133400 [exp] 121 / 2e-32 AT5G52060 305 / 2e-102 BCL-2-associated athanogene 1 (.1) Potri.015G135500 [exp] 120 / 7e-32 AT5G52060 303 / 2e-101 BCL-2-associated athanogene 1 (.1) Potri.001G110300 [exp] 107 / 3e-27 AT5G52060 239 / 2e-76 BCL-2-associated athanogene 1 (.1) Potri.003G121500 [exp] 102 / 8e-26 AT5G52060 243 / 1e-78 BCL-2-associated athanogene 1 (.1) Potri.001G339100 [exp] 62 / 5e-12 AT5G14360 166 / 6e-53 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005051 [exp] 271 / 1e-89 AT3G51780 221 / 1e-69 BCL-2-associated athanogene 4 (.1) Lus10027822 [exp] 266 / 4e-89 AT3G51780 221 / 4e-71 BCL-2-associated athanogene 4 (.1) Lus10003393 [exp] 174 / 1e-53 AT3G51780 180 / 5e-56 BCL-2-associated athanogene 4 (.1) Lus10002209 [exp] 162 / 3e-48 AT3G51780 149 / 6e-43 BCL-2-associated athanogene 4 (.1) Lus10023279 [exp] 137 / 2e-39 AT5G07220 196 / 4e-62 BCL-2-associated athanogene 3 (.1) Lus10027420 [exp] 125 / 8e-34 AT5G52060 349 / 6e-120 BCL-2-associated athanogene 1 (.1) Lus10038882 [exp] 124 / 8e-34 AT5G52060 327 / 1e-111 BCL-2-associated athanogene 1 (.1) Lus10015004 [exp] 120 / 4e-32 AT5G52060 333 / 4e-114 BCL-2-associated athanogene 1 (.1) Lus10005772 [exp] 109 / 6e-28 AT5G52060 304 / 2e-102 BCL-2-associated athanogene 1 (.1) Lus10022315 [exp] 63 / 1e-11 AT5G14360 158 / 2e-49 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family CL0072 [poplar] [flax] PF02179 [poplar] [flax] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Potri.016G121200.1 pacid=42809768 polypeptide=Potri.016G121200.1.p locus=Potri.016G121200 ID=Potri.016G121200.1.v4.1 annot-version=v4.1 ATGAGTTCAAAAAATGAAGAAATTAATCATGGAGGGAGACAGTTTAATCATAACTTGATCAAAATCAACGTCTCTCACGGTCCCTCCCACCTCGAACTCC ATGTCCCTGCTCATTCCACTTTCGGGCATGTTAAAAAGGTAATCGAACAGCAAACCGGTTTGGAATCGGAAAAGCAGAGGATTTTGTTCAGAGGAAACGA AAAGGAGGACGGAGAGAATTTGCAGGAGGCAGGCGTGAGGGATAACTCCAAGATTTTGGTTTTGGAGGACGTGGCGAGGAAGGAGATGAAGGAAGGCGAG GACACATCAACGGCGACAATGCAGGAAAATGTGGAGGAGGTGAAGGGAAACGATAAGGAGATGTCGAGGGCCTTTCGAGCTATTGACGAAACGAGGAAGG AGATTGATAAGCTTGCGGAAAGAGTGGGTGCTTTGGAAGTGGCTGTGCGTGGCGGGACTAGGGTTTCGGAGGATGAATTTGGTGTTTTTTCGGAGTTGCT CATGAGGCAGTTGCTGAAATTGGATGCTATTGAGGCGGAAGGGGAAGCACGGGTGCAGCGAAAGGCTGAGGTTCGTCGTGTCCAGAATTTCCATGAGATA TTAGACAACCTGAAGGCAAGAAATCCCAAGCCATTGGGCAATAGTGGCAATGCGACAGTGACAACTGAATGGGAGACCTTCGACTCTGGATTGGGAAGCT CAAGTCCCCCACCCTCAATCCCATCTTCAACAAGAATTACTCAGGATTGGGAAAGGCTTGAGTAG
AA sequence Show only first row Show all	>Potri.016G121200.1 pacid=42809768 polypeptide=Potri.016G121200.1.p locus=Potri.016G121200 ID=Potri.016G121200.1.v4.1 annot-version=v4.1 MSSKNEEINHGGRQFNHNLIKINVSHGPSHLELHVPAHSTFGHVKKVIEQQTGLESEKQRILFRGNEKEDGENLQEAGVRDNSKILVLEDVARKEMKEGE DTSTATMQENVEEVKGNDKEMSRAFRAIDETRKEIDKLAERVGALEVAVRGGTRVSEDEFGVFSELLMRQLLKLDAIEAEGEARVQRKAEVRRVQNFHEI LDNLKARNPKPLGNSGNATVTTEWETFDSGLGSSSPPPSIPSSTRITQDWERLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.016G121200 [exp]	0	1
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	1.73	0.7156
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	3.74	0.7158	EXGT.4
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	7.07	0.7496
AT4G16510			YbaK/aminoacyl-tRNA synthetase...		Potri.003G111100 [exp]	11.22	0.6835
					Potri.005G149601 [exp]	12.32	0.6632
AT5G58930			Protein of unknown function (D...		Potri.001G248400 [exp]	16.49	0.6685
AT5G54940			Translation initiation factor ...		Potri.010G151700 [exp]	16.91	0.6604
AT4G25225			unknown protein		Potri.001G124100 [exp]	18.02	0.6498
AT3G03330			NAD(P)-binding Rossmann-fold s...		Potri.013G084100 [exp]	20.49	0.6628
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	22.97	0.6743	ATS9.2

Compare expression of checked genes

Potri.016G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.