Plant FIBer expression Database

Potri.016G121500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28960 234 / 2e-76 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
AT2G33980 218 / 5e-70 ATNUDT22 nudix hydrolase homolog 22 (.1)
AT5G45940 195 / 7e-62 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G063300
[exp]
243 / 3e-80 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053100
[exp]
242 / 1e-79 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053200
[exp]
226 / 8e-74 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053300
[exp]
218 / 6e-71 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025424
[exp]
228 / 8e-74 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10015301
[exp]
223 / 5e-72 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10041965
[exp]
198 / 8e-63 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.016G121500.2 pacid=42808898 polypeptide=Potri.016G121500.2.p locus=Potri.016G121500 ID=Potri.016G121500.2.v4.1 annot-version=v4.1
ATGATTAACAGGGCTTGCATTACTGTGCCCTCTACGTGCATGGAAAACGCTGGCTTCAAAAAGGGCATGTTCTGTGGCAGCCAATTAACGCTACAAAAAA
TTGCAGAGCAGCTCCAATTTCTTACTCCACCTAGAGTGAATACTATGGAAGTAGAGCACTTTGATGATAATATTGGTTCAAAGCTTGAGATCATGGAGTC
TGTAGCAGTAGAAAATGATGAGTTTTGCTTGGAGAATTGGAGGAAGAAGAGAGCGGCTGTCTTGATTTGCCTCTTCGAAGGCAATGAACGCGAGCTACGT
GTTATTCTTACTAAGAGATCTATGAAGTTGTCTTCTCATCCAGCAGGAGATGTAGCATTGCCGGGTGGGAAGATGGAAGAAGGAGATGTAGATGACTCTG
CAACTGCATTAAGGGAAGCCATGGAAGAGATAGGTTTGGATCCTCATCTTGTTCAAGTTGTTGCAAACTTAGAGCCCTTTATTTCCCAGCACCAGCTGAA
GGTTGTTCCTGTGGTAGGGCTACTAGCCAGGGTAGAAGACTTCAAGCCTGTACTAAATACTGACGAAGTTGACACTCTTTTTGATGTCCCATTGGAAATG
TTTCTCAAGGAAGAAAATCATCGATGGGAAGAGAAGGAATGGATGGGTTGGAACTATTGTCTCCATCTCTTCGATTTTGAATCCGAGAAAGGAGTTTTTC
TCATATGGGGTTTAACAGCAAGCATTCTTATTGAAACAGCCTCTGTCATCTACCAGCGGTCTCCAAGTTTCGAGCATCATCTCCGAGATTTTCAACAATT
ACAAAAGGCCTTGAACAATAATAGTATTGCATGA
AA sequence
>Potri.016G121500.2 pacid=42808898 polypeptide=Potri.016G121500.2.p locus=Potri.016G121500 ID=Potri.016G121500.2.v4.1 annot-version=v4.1
MINRACITVPSTCMENAGFKKGMFCGSQLTLQKIAEQLQFLTPPRVNTMEVEHFDDNIGSKLEIMESVAVENDEFCLENWRKKRAAVLICLFEGNERELR
VILTKRSMKLSSHPAGDVALPGGKMEEGDVDDSATALREAMEEIGLDPHLVQVVANLEPFISQHQLKVVPVVGLLARVEDFKPVLNTDEVDTLFDVPLEM
FLKEENHRWEEKEWMGWNYCLHLFDFESEKGVFLIWGLTASILIETASVIYQRSPSFEHHLRDFQQLQKALNNNSIA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.016G121500
[exp]
0 1
Potri.014G030700
[exp]
1.73 0.9339
AT2G20500 unknown protein Potri.002G038400
[exp]
1.73 0.9245
AT5G53190 SWEET3, AtSWEET... Nodulin MtN3 family protein (.... Potri.012G031400
[exp]
5.47 0.9148
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.009G154100
[exp]
7.74 0.9289
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Potri.007G023800
[exp]
8.94 0.9239
Potri.010G010416
[exp]
11.40 0.9092
AT4G25970 PSD3, PSD2 phosphatidylserine decarboxyla... Potri.002G127000
[exp]
11.83 0.8954
AT3G45290 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, S... Potri.006G129700
[exp]
18.33 0.9167
AT2G29100 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, gluta... Potri.004G052500
[exp]
30.49 0.9063
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.002G230000
[exp]
30.98 0.9059 Pt-GLUR3.3

Potri.016G121500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.