Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07080 205 / 2e-65 Thioredoxin superfamily protein (.1) AT5G01580 184 / 9e-58 OSH1 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12890 179 / 1e-55 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12900 172 / 6e-53 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) AT4G12960 166 / 2e-50 GILT, AtGILT gamma-interferon-responsive lysosomal thiol reductase, Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1), Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.2) AT4G12870 159 / 8e-48 Gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107600 [exp] 484 / 1e-175 AT1G07080 204 / 2e-65 Thioredoxin superfamily protein (.1) Potri.012G107300 [exp] 484 / 2e-175 AT1G07080 205 / 1e-65 Thioredoxin superfamily protein (.1) Potri.016G121900 [exp] 204 / 2e-65 AT5G01580 263 / 3e-89 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Potri.009G076200 [exp] 203 / 1e-64 AT1G07080 278 / 3e-94 Thioredoxin superfamily protein (.1) Potri.006G103000 [exp] 190 / 9e-60 AT1G07080 196 / 3e-62 Thioredoxin superfamily protein (.1) Potri.001G281004 [exp] 187 / 1e-58 AT1G07080 266 / 8e-90 Thioredoxin superfamily protein (.1) Potri.016G122000 [exp] 184 / 1e-57 AT1G07080 185 / 3e-58 Thioredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042270 [exp] 210 / 3e-67 AT1G07080 285 / 5e-97 Thioredoxin superfamily protein (.1) Lus10026384 [exp] 207 / 2e-66 AT1G07080 281 / 1e-95 Thioredoxin superfamily protein (.1) Lus10022669 [exp] 201 / 4e-64 AT1G07080 170 / 2e-52 Thioredoxin superfamily protein (.1) Lus10012503 [exp] 189 / 1e-59 AT1G07080 171 / 1e-52 Thioredoxin superfamily protein (.1) Lus10002203 [exp] 188 / 3e-59 AT5G01580 238 / 2e-79 OAS HIGH ACCUMULATION 1, gamma interferon responsive lysosomal thiol (GILT) reductase family protein (.1) Lus10022670 [exp] 153 / 1e-42 AT4G00620 527 / 0.0 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1) Lus10012502 [exp] 140 / 1e-37 AT4G00620 442 / 6e-152 EMBRYO DEFECTIVE 3127, Amino acid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF03227 [poplar] [flax] GILT Gamma interferon inducible lysosomal thiol reductase (GILT)
Representative CDS sequence Show only first row Show all	>Potri.016G122200.1 pacid=42810305 polypeptide=Potri.016G122200.1.p locus=Potri.016G122200 ID=Potri.016G122200.1.v4.1 annot-version=v4.1 ATGGGCTCTTCTCCATTACTCTCTTTCCTTGTTCTCACTTCTCTGGTGGTGTTGTTCGTCACCCCTTCCCATTCTTCAGAGTACGATGTTGTTCAGGAAC CAGCGCCTCCTGTTACGTCCAGGAAAATCTCTCGCAATTCTGAGAAAGTTACAATGTCTTTATATTATGAATCTCTTTGTCCATATTGCAGCAGTTTCAT TGCAGGTCCCCTAGCTCAGGTCCTGGAGACTGATCTCATGACCATTCTCAATCTCAGACTGGTTCCATGGGGAAATGCTATTCTCGACTCCAACAATACC ATTGAGTGTCAGCATGGGGAAGATGAATGCTATCTGAACATCATACAAGCTTGTGCCATCAACCTCTGGCCTGATTTGAAGAAGCACTTTGATTTCATCA AGTGTATCGAAAAGCAATATAAAGCTCCTGATAGATATGGAGCAGAAGAATCCTGGGAAGTATGTTCTGGTATATTGAGACTGTCTACACAATCCATCAA GAAATGCTATGACAGTGGACATGGAAAAGAGCTTGTCCTACAAAATGGCAAAGAAACAGATCATCTCAGACCACCTCACAAATACGTGCCATGGGTGGTA GTAGATGATACACCTCTCCTTGATGACTATGGGAGTTTCATTCACTATGTTTGCAAGGCATACAAAGGCAAGTCTTTGCCCAAGACTTGCAGTTCACATC CCAACACCTCAATTAACAAGGACACCTCACTCCAATCAGTCTGTCATGCAAGCGAAGCGAGGTCAGGTGACAGTTCAGGGAAGCACCAGATGAAGATGGA ACCCCTTGCATGA
AA sequence Show only first row Show all	>Potri.016G122200.1 pacid=42810305 polypeptide=Potri.016G122200.1.p locus=Potri.016G122200 ID=Potri.016G122200.1.v4.1 annot-version=v4.1 MGSSPLLSFLVLTSLVVLFVTPSHSSEYDVVQEPAPPVTSRKISRNSEKVTMSLYYESLCPYCSSFIAGPLAQVLETDLMTILNLRLVPWGNAILDSNNT IECQHGEDECYLNIIQACAINLWPDLKKHFDFIKCIEKQYKAPDRYGAEESWEVCSGILRLSTQSIKKCYDSGHGKELVLQNGKETDHLRPPHKYVPWVV VDDTPLLDDYGSFIHYVCKAYKGKSLPKTCSSHPNTSINKDTSLQSVCHASEARSGDSSGKHQMKMEPLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07080			Thioredoxin superfamily protei...		Potri.016G122200 [exp]	0	1
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Potri.009G004100 [exp]	15.36	0.7280
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	18.70	0.7255
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.009G149600 [exp]	19.89	0.7233
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	29.58	0.7230
AT5G45290			RING/U-box superfamily protein...		Potri.006G190500 [exp]	32.07	0.6729
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.013G096701 [exp]	32.78	0.6679
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.001G406300 [exp]	37.78	0.6854
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	37.94	0.7148
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	42.73	0.7024
AT1G05170			Galactosyltransferase family p...		Potri.004G013900 [exp]	44.49	0.6702

Compare expression of checked genes

Potri.016G122200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.