Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08880 124 / 2e-35 unknown protein AT5G01570 66 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107200 [exp] 125 / 5e-37 AT3G08880 81 / 7e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022668 [exp] 163 / 5e-51 AT3G08880 157 / 9e-49 unknown protein Lus10012504 [exp] 110 / 2e-31 AT3G08880 109 / 2e-31 unknown protein Lus10012505 [exp] 77 / 4e-18 AT5G01570 69 / 8e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G122350.1 pacid=42809409 polypeptide=Potri.016G122350.1.p locus=Potri.016G122350 ID=Potri.016G122350.1.v4.1 annot-version=v4.1 ATGGGGGATTTCTCTGGAAAAATCGACGTAGAGAAACTAATCTCATTCAGCGACGATCTCGTCGCCGTTTTAAAGGATCAAAGAGACATTAACAACTTGA GTCACTGTCTTCAACAGTCACACTCTCTCAAATCCTCTTGCGATGCTGAATTCAACGACTCCAAAACCCTAATCGAAGATTATGAGAAAAAGATAGAAGA ATGCAAGAAGAAAACGGAGAAGGCGAAAGCGGAAGTTGTTTCCGATGCCGACATGGAGATTCTGGAGCAGGAATTGGAAGTGGAGCTTCAAAAAGAAGCT GCTCTTACGGAGGAGCTCAGAGTGATCAACAATGAGATTAGTGATTTGGAGTGTCAACGGGTTTCTTTTGAGGAACGAAAGCGAAATATGAAGAAAAACG AGAAAGATGAGCTCAGAGCAGAGAGGATGCTTTCAATGTATGCATCTGTGACTAATATCATCCCGGACTTGGATGATCACTCCAAAATCTCTGGCCATAT TGTGCATAGAGATAACAAGGCTGTTGAGAAATTTGAATTTGATCCGACAAAGATAAGTTCATTTGAAATATGTCAGAGCATCTGGGAGATGATAAATAAG CAATAG
AA sequence Show only first row Show all	>Potri.016G122350.1 pacid=42809409 polypeptide=Potri.016G122350.1.p locus=Potri.016G122350 ID=Potri.016G122350.1.v4.1 annot-version=v4.1 MGDFSGKIDVEKLISFSDDLVAVLKDQRDINNLSHCLQQSHSLKSSCDAEFNDSKTLIEDYEKKIEECKKKTEKAKAEVVSDADMEILEQELEVELQKEA ALTEELRVINNEISDLECQRVSFEERKRNMKKNEKDELRAERMLSMYASVTNIIPDLDDHSKISGHIVHRDNKAVEKFEFDPTKISSFEICQSIWEMINK Q

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08880			unknown protein		Potri.016G122350 [exp]	0	1
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.013G041400 [exp]	2.44	0.7339
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	7.74	0.7338	Pt-SMO1.1
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	8.06	0.7221
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Potri.002G046900 [exp]	8.12	0.6574
AT1G69160			unknown protein		Potri.010G154200 [exp]	9.16	0.7465
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	11.66	0.7280
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	12.00	0.6770
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	20.19	0.6936
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	20.44	0.6716
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	25.51	0.6736

Compare expression of checked genes

Potri.016G122350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.