Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 1146 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 736 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G13080 702 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT1G04120 701 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13090 700 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60160 696 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13100 682 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60970 679 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G62700 651 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 647 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023800 [exp] 1456 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 1358 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 1337 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G095600 [exp] 1077 / 0 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G135800 [exp] 1029 / 0 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G034700 [exp] 783 / 0 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.001G362300 [exp] 732 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.002G255800 [exp] 728 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.001G362200 [exp] 717 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027567 [exp] 1266 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 1261 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10017548 [exp] 976 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 776 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10024965 [exp] 740 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10022858 [exp] 740 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10013201 [exp] 719 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10023139 [exp] 682 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10042023 [exp] 681 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10030716 [exp] 676 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.016G122901.1 pacid=42809943 polypeptide=Potri.016G122901.1.p locus=Potri.016G122901 ID=Potri.016G122901.1.v4.1 annot-version=v4.1 ATGGATAGGCAACGATACCATGACACACTTGAGCGATGCTCTTTGGTAAAGGACCTTGAGTTGCTTCCTTGTGGTGATCTTACTGAAATAGGTGAAAGAG GAGTCAATTTGAGTGGTGGTCAAAAGCAGCGAGTTCAACTTGCCCGGGCTCTCTATCAGAATGCAGATATATATCTCTTTGATGATCCATTCAGCGCTGT GGATGCACACACAGCTACAAGTTTATTCAATGAATATATCATGGGAGCACTTTCAAGGAAAACAGTCTTGTTTGTGACTCATCAAGTTGATTTCCTGCCA GCATTTGACTCTGTTATGTTGATGTCGGATGGAGAAATCCTACAAGCCGCTCCTTATCATCAGTTATTGTTGTCTAACCAAGAATTTCTGGACCTTGTCA ATGCACACAAAGAAACAGCTGGTTCTGAAAGGCATACCGAGGTTGATGCTTCGCAGAGACAAGGATCATCTGTTAGGGAGATCAAGAAGAGTTATGTAGA GGGGCAGATTAAAACCTCTCAAGGAGATCAACTGATTAAGCAGGAAGAAAAGGAAGTGGGAGACACAGGGTTTAAGCCTTATGTGCAATATCTAAATCAA AACAAAGGATACGTGTACTTCTCCATTGCTGCTTTCAGTCACCTGTTGTTTGTCATTGGTCAGATAACACAGAACTCTTGGATGGCAGCTAATGTTGATG ATCCTCATGTCAGCACATTACGTTTAATTGCGGTCTATCTGTGTATTGAAGTTACCTCAACACTTTTCTTGCTATGTAGATCAATCTCTATAGTTGTTTT GGGTCTTCAATCATCGAAGTCATTATTTTCCCAGCTACTAAATTCTCTTTTTCGTGCACCCATGTCTTTCCATGACTCCACACCTCTTGGAAGAATACCG AGTCGGGTCACGTCAGATTTGAGCATTGTCGATCTTGATGTTCCTTTCGTTTTGATCTTCACCGTTGGTGTAACCACAAATGCTTATAGTGACCTGGGAG TACTGGCTGTTGTCACCTGGCAAGTCCTGTTTGTCTCCATACCAATGGTTTATTTGGCTATTCGCTTACAGGCATATTACTTTGCCTCTGCTAAAGAATT GATGCGGATCAATGGCACAACCAAGTCTTTGGTGTCAAATCATCTAGCTGAATCTATAGCAGGAGCCATGACAATAAGGGCCTTTGAGGAGGAAGAACGT TTCTTCGCAAAAACCCTTAACCTCATTGACATAAATGCTAGTCCTTTCTTCCACAGTTTTGCTGCAAATGAGTGGTTGATTCAACGGCTTGAAATATTTA GTGCAACTGTTCTTGCCTCTGCAGCACTCTGCATGGTTTTACTACCTCCTGGAACTTTTAACTCTGGATTTATTGGAATGGCACTTTCTTATGGACTTTC ATTAAATATGACGCTGGTGTTTTCAATTCAAAGCCAGTGCACATTAGCAAATTACATCATTTCTGTTGAAAGGCTTAATCAATACATGCGCATACCAAGT GAAGCCCCTGAGGTGATTAAAGATAACCGACCTCCATCGAATTGGCCGGAAAAGGGTAAAGTGGATATTTGTGATTTGCAGATTAGATACAGGCCTGACG CACCACTAGTTCTTCGAGGAATCAGTTGCACATTTGAAGGAGGGCACAAGATTGGAATTGTTGGTCGAACCGGCAGTGGGAAGACTACACTTATAGGTGC TCTATTTCGACTGGTGGAACCAGCTGGAGGAAAGATCATCGTAGATGGAATTGACATCTCTAAGATTGGACTTCATGATCTGCGGTCACGACTCGGAATA ATACCTCAAGATCCTACTCTCTTTAGCGGGACTGTGAGATACAATTTGGACCCCTTATCCCAGCACACTGACCAGGAGATATGGGAGGTTCTCGGAAAGT GTCAGCTTCAAGAGGCTGTACAGGAGAAAGAGCAGGGTCTAGATTCTTTAGTTGTGGAAGATGGATCGAATTGGAGCATGGGGCAGAGACAATTATTTTG CTTGGGCCGTACCATTTTGAGTAGGAGTAGGGTACTGGTGCTTGATGAAGCAACCGCATCAATTGATAATGCAACTGACTTGGTTTTGCAAAAGACTATT CGGACTGAATTTTCAGATTGCACTGTAATCACAGTAGCTCACAGGATACCAACAGTGATGGATTGCACAATGGTACTTTCCATTAGCGATGGAAAACTAG TCGAGTTCGACGAGCCGGAGAAGTTAATGAAGATGGAAGGTTCACTTTTTGGACAACTTGTGAAGGAGTACTGGTCTCATTTACACGCTGCAGAATCACA TTGA
AA sequence Show only first row Show all	>Potri.016G122901.1 pacid=42809943 polypeptide=Potri.016G122901.1.p locus=Potri.016G122901 ID=Potri.016G122901.1.v4.1 annot-version=v4.1 MDRQRYHDTLERCSLVKDLELLPCGDLTEIGERGVNLSGGQKQRVQLARALYQNADIYLFDDPFSAVDAHTATSLFNEYIMGALSRKTVLFVTHQVDFLP AFDSVMLMSDGEILQAAPYHQLLLSNQEFLDLVNAHKETAGSERHTEVDASQRQGSSVREIKKSYVEGQIKTSQGDQLIKQEEKEVGDTGFKPYVQYLNQ NKGYVYFSIAAFSHLLFVIGQITQNSWMAANVDDPHVSTLRLIAVYLCIEVTSTLFLLCRSISIVVLGLQSSKSLFSQLLNSLFRAPMSFHDSTPLGRIP SRVTSDLSIVDLDVPFVLIFTVGVTTNAYSDLGVLAVVTWQVLFVSIPMVYLAIRLQAYYFASAKELMRINGTTKSLVSNHLAESIAGAMTIRAFEEEER FFAKTLNLIDINASPFFHSFAANEWLIQRLEIFSATVLASAALCMVLLPPGTFNSGFIGMALSYGLSLNMTLVFSIQSQCTLANYIISVERLNQYMRIPS EAPEVIKDNRPPSNWPEKGKVDICDLQIRYRPDAPLVLRGISCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDISKIGLHDLRSRLGI IPQDPTLFSGTVRYNLDPLSQHTDQEIWEVLGKCQLQEAVQEKEQGLDSLVVEDGSNWSMGQRQLFCLGRTILSRSRVLVLDEATASIDNATDLVLQKTI RTEFSDCTVITVAHRIPTVMDCTMVLSISDGKLVEFDEPEKLMKMEGSLFGQLVKEYWSHLHAAESH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122901 [exp]	0	1
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	1.73	0.8516
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411100 [exp]	2.64	0.8198
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	6.32	0.8332
					Potri.019G131050 [exp]	6.48	0.8349
AT4G10780			LRR and NB-ARC domains-contain...		Potri.018G145568 [exp]	10.00	0.8268
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	11.48	0.8240	PtrMTP2,Pt-MTP1.2
					Potri.004G011375 [exp]	14.45	0.8079
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	15.49	0.8166
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.007G057850 [exp]	18.73	0.8116
AT4G27680			P-loop containing nucleoside t...		Potri.012G027101 [exp]	20.00	0.8093

Compare expression of checked genes

Potri.016G122901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.