Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01550 629 / 0 LECRKA4.2 lectin receptor kinase a4.1 (.1) AT3G08870 610 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 593 / 0 LECRKA4.3 lectin receptor kinase a4.3 (.1) AT5G01540 586 / 0 LECRKA4.1 lectin receptor kinase a4.1 (.1) AT3G53810 542 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 535 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 533 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 530 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 528 / 2e-180 RLK receptor lectin kinase (.1) AT4G29050 506 / 6e-172 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G122650 [exp] 1151 / 0 AT5G01550 576 / 0.0 lectin receptor kinase a4.1 (.1) Potri.006G103200 [exp] 988 / 0 AT3G08870 644 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 571 / 0 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.006G088400 [exp] 568 / 0 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.006G088600 [exp] 568 / 0 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 566 / 0 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.006G088632 [exp] 555 / 0 AT2G37710 770 / 0.0 receptor lectin kinase (.1) Potri.001G244000 [exp] 536 / 0 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.010G200600 [exp] 532 / 0 AT3G55550 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022662 [exp] 718 / 0 AT5G01550 651 / 0.0 lectin receptor kinase a4.1 (.1) Lus10012509 [exp] 595 / 0 AT3G08870 555 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 565 / 0 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 552 / 0 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 550 / 0 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029315 [exp] 544 / 0 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 542 / 0 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10016506 [exp] 538 / 0 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040276 [exp] 535 / 0 AT3G55550 750 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 535 / 0 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.016G123300.1 pacid=42808973 polypeptide=Potri.016G123300.1.p locus=Potri.016G123300 ID=Potri.016G123300.1.v4.1 annot-version=v4.1 ATGGCCTCCACGATTTGTTTGTTTTTGTTGTACATGTTCATTTCTATGATTGTTGAGGCTCAAAGTGTAGAGTTCATCTTCAATGGATTCAATGAAAGTG AAAAAAACCTCACAATTGATGGAGCTTCTATTATCAAGCCTAGTGGTTTACTAAGGCTCACCAACAAAACACAATATGCTGTAGGGCATGCATTTTATTC CAAACCAATACAGATGCTTGACACAAGTTCAAATTCATCTCCAAATGCTTCATCTTTCAGCACAACCTTTGTCTTTCAGATAGTCTCTCCAAAAGGAAAA GGAGGCCACGGCCTTGCTTTCGCCTTAGCTCCCTCCAACCAGTTTCCCGGGGCTGCCGCGGAGCATTACCTTGGTCTTTTCAACCCTTCAAATAATGGTG ATAGCTCAAACCATATTTTTGCTGTTGAATTTGACACGGTTAATGGGTTCAACGAGAATTCAGACACTGAAGGAAATCATGTCGGAGTCAACATTAACAG CATGCGTTCGAAGTCATCGAGGGCAGCTTCCTATAGAGAGGATGACAACCCAGACCGGTATGAAGAATTGACGTTGGAGAGTGGTGAACCTATTCAAGCC TGGATAGAATATGATGGTGCGGCTAAACTTGTTAGTGTAACAATAGGTCCCATGGAGAAAAGCAGACCGATTCGACCACTCATTTCTTTTCCCGTAGATC TAAGCGCAGTTGTTAAGGATAACATGTATGCTGGTTTCTCTTCCTCTACTGGTAAAAAGACAAGCTCTCATTACATACTGGGATGGAGTTTTTCCACTGA AAAAGCAGGCGCCCGTCCGCTCAATCTTTCTCTACTTCCCAGAGCACCAATATCTGAGGAAAGTTCATCCTCTTTCCAACCCTCAGTGATTGCTATTATC GCTTCTTTATGCGGTGTGACCACTATTCTGTTTGCAATACTGCTCTTTCATGCTGTGTACAGAAATTGGCCTCAGTCTGAGGCTCTTGAAGACTGGGAAG TGGATTGTCCGCACAGGTTTCGCTATCAAGATCTACATACGGCAACCAAGGGTTTTAAAAAGAGTGAGATAATTGGGGCTGGTGGGTTTGGTGCGGTGTA CAAAGGTAGATTGCCTACAAACGGAAATGAAGTTGCTGTTAAGAGGATCACTACCAATTCAATCCAGGGTTTGAGAGGATTCACTGCGGAGATCGAGAGC CTGGGACGTTTACGGCACAAGAACTTGGTGAATCTCCAAGGATGGTGTAAGAGAAATAATGACCTCCTCCTGGTTTACGACTACATCCCAAATGGAAGCC TTGCCGGTCTCCTTTTCAGTCGGGGAAACAACTTTGTACTGAGCTGGGAGCAAAGATTCAATATTGTTAAAGGCATTGCAGCAGGGCTTTTGTATCTGCA TGAGGAATGGGAGCAAGTGGTGATTCACAGAGATGTCAAGTCAAGCAATGTCCTGATAGACGCAGGAATGAACGGGCGGTTAGGGGACTTTGGTCTAGCC AGGTTGTATGATCATGGAACCATGTCGCACACCACAAATATTGTTGGCACGATAGGGTATATCGCACCTGAATTGGCACGGACCGGTCAGGCTTCTACCA GTTCCGATGTGTACGCATACGGTATTTTGCTCCTTGAAGTGGCTTGTGGCAGAAAGCCCGTTGAAACGAGTAACTTCATCCTGACAGATTTCGTGATTGA ATGCCATCAAAAGGGTAGAGTTCTTGATGCAGCTGATCCAGAGCTGAACTCTGCCTTCCTGGTCAAGGAAATGGAGGTGGTGCTGGGGTTGGGTCTTCTG TGTTCTCATCACAAGCCTAAAGCCAGGCCAACCATGAGAGAAGTCATACGGTATCTCAACTGGGAAGAAAAGCTCCCAGTGATTGATGATCTGGGCTCTT CTGATTCTCCATGTAGGAGCACAAGATATATGGGAGAGGTTTCCATTGAAATGATCACAAGTTCCATAGATGTTGGCAGATAG
AA sequence Show only first row Show all	>Potri.016G123300.1 pacid=42808973 polypeptide=Potri.016G123300.1.p locus=Potri.016G123300 ID=Potri.016G123300.1.v4.1 annot-version=v4.1 MASTICLFLLYMFISMIVEAQSVEFIFNGFNESEKNLTIDGASIIKPSGLLRLTNKTQYAVGHAFYSKPIQMLDTSSNSSPNASSFSTTFVFQIVSPKGK GGHGLAFALAPSNQFPGAAAEHYLGLFNPSNNGDSSNHIFAVEFDTVNGFNENSDTEGNHVGVNINSMRSKSSRAASYREDDNPDRYEELTLESGEPIQA WIEYDGAAKLVSVTIGPMEKSRPIRPLISFPVDLSAVVKDNMYAGFSSSTGKKTSSHYILGWSFSTEKAGARPLNLSLLPRAPISEESSSSFQPSVIAII ASLCGVTTILFAILLFHAVYRNWPQSEALEDWEVDCPHRFRYQDLHTATKGFKKSEIIGAGGFGAVYKGRLPTNGNEVAVKRITTNSIQGLRGFTAEIES LGRLRHKNLVNLQGWCKRNNDLLLVYDYIPNGSLAGLLFSRGNNFVLSWEQRFNIVKGIAAGLLYLHEEWEQVVIHRDVKSSNVLIDAGMNGRLGDFGLA RLYDHGTMSHTTNIVGTIGYIAPELARTGQASTSSDVYAYGILLLEVACGRKPVETSNFILTDFVIECHQKGRVLDAADPELNSAFLVKEMEVVLGLGLL CSHHKPKARPTMREVIRYLNWEEKLPVIDDLGSSDSPCRSTRYMGEVSIEMITSSIDVGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	0	1
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	1.00	0.9912
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Potri.011G075800 [exp]	2.82	0.9644	AG1.1
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.001G250500 [exp]	4.24	0.9643
					Potri.017G110900 [exp]	5.47	0.9413
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	7.07	0.9495
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	7.21	0.9511
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Potri.010G046400 [exp]	7.34	0.9451
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	12.72	0.9416
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G099032 [exp]	14.14	0.9418
AT5G38260			Protein kinase superfamily pro...		Potri.007G125800 [exp]	15.55	0.9363

Compare expression of checked genes

Potri.016G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.