Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08943 1288 / 0 ARM repeat superfamily protein (.1) AT3G08947 1285 / 0 ARM repeat superfamily protein (.1) AT5G53480 979 / 0 ARM repeat superfamily protein (.1) AT2G16950 92 / 1e-18 ATTRN1 transportin 1 (.1.2) AT2G16960 58 / 2e-08 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103300 [exp] 1602 / 0 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1) Potri.015G010400 [exp] 1012 / 0 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 1009 / 0 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.004G177700 [exp] 53 / 8e-07 AT2G16950 1279 / 0.0 transportin 1 (.1.2) Potri.009G138200 [exp] 53 / 9e-07 AT2G16950 1316 / 0.0 transportin 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008864 [exp] 988 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 986 / 0 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 985 / 0 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 974 / 0 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10034318 [exp] 970 / 0 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10023247 [exp] 361 / 5e-115 AT5G53480 509 / 3e-172 ARM repeat superfamily protein (.1) Lus10031905 [exp] 76 / 5e-16 AT5G53480 106 / 7e-28 ARM repeat superfamily protein (.1) Lus10023999 [exp] 72 / 1e-12 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10014540 [exp] 61 / 3e-10 AT5G53480 106 / 1e-26 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF13513 [poplar] [flax] HEAT_EZ HEAT-like repeat
Representative CDS sequence Show only first row Show all	>Potri.016G123600.2 pacid=42809738 polypeptide=Potri.016G123600.2.p locus=Potri.016G123600 ID=Potri.016G123600.2.v4.1 annot-version=v4.1 ATGGCAATGGAGATCACTCAGTTTCTATTGGCTGCCCAATCACCAGATGCAAATATCCGTACTCAGGCAGAGGCTAGTCTTAGGCAGTTCCAAGAGCAGA GCTTGCCCCTTTTCCTCTTATCATTGTCAGTGGAGCTTGCAAACAATGAGAAGCCTTTGGAATCACGTAGGTTGGCTGGTATTGTTCTTAAAAACTCTTT AGATGCTAAAGATTCTGTGAGAAAGGAACATCTTGTTCAGCAATGGATGGCAATTGAAATTTCCATGAAAGCACAAATCAAAGACTTGCTCCTGAGGACT CTTGGGTCATCTGCATCAGAAGCAAGACACACTTCTGCCCAAGTAATTGCAAAAGTTGCTTCCATTGAGATTCCACGGAAGCAGTGGCCTGAGCTTATCG GATCATTGCTTAAGAATATGACCCAGCAAGATAGTCCTGCAGCTTTGAAACAGGCAACATTGGAAACTCTTGGATATGTTTGTGAGGAGATATCCCACCA GGATCTTGTGCAGGATGAAGTGAACTCTGTTCTCACTGCTGTTGTCCAAGGCATGAACCTTGCTGAACATAGTTGTGAAGTACGCCTTGCTGCTACAAAG GCCTTATATAATGCCTTAGATTTTGCTCAGACCAACTTTGAAAATGATATGGAGCGGAATTACATAATGAAGGTGGTATGCGAGACAGCAATTTCTAAAG AGGCAGATATCAGGCAGGCTGCTTTTGAGTGTCTTGTTTCTATAGCGTCAACATACTATGATGTGCTTGAACCTTATATGCAGACCCTCTTCCAGCTCAC ATCAAATGCTGTGAAAGGGGATGAAGAGAGTGTTGCCCTCCAAGCAATAGAATTCTGGAGCTCCATTTGTGATGAAGAGATAGAGCTTCAAGAATATGGG ACCCTTGAAGGTGGAGATTCGGGGTCTACTCATTCACGCTTCATAGAAAAGGCCCTCCCATATCTTGTTCCTTTGTTGTTGGATACTTTGTTGAAACAGG AGGAGGATCAGGATCAGGATGATAGCATTTGGAATATATCCATGTCAGGGGGCACCTGTCTAGGTCTTGTTGCTAGAACTGTTGGGGATTCTGTTGTGAA ACTAGTAATGCCCTTTGTAGAGGGTAATATTCTGAAGCCAGATTGGCATTGTCGTGAGGCAGCCACATATGCATTTGGCTCAATTCTAGAAGGCCCTAGC CTTGAAACATTAGGTCCGCTTGTTTCTAATGGCTTGGATTTTCTGCTTAATGCGATGAGGGATGAAAATAATCATGTTAAGGACACAACTGCATGGGCTC TTAGTCGTATTTTTGAGTTTTTGCACTGTCCTGCCAGTGGATTTTCTGTGGTTTCCCCAGAGAACCTGGAAAGGATTGTAACTGTCTTGCTGGAGAGTAT TAATGATGCTCCAAATGTAGCTGAGAAGGTTTGTGGGGCAATCTATTACCTTGCACAGGGATATGAAGATGCTGGAACAAATTCCTCACTTCTAACTCAA TACATCCCTAGGATAATCTCTGAACTTCTCAAAACTGCTGAGCGGTCAGATGGGAGCGATTCTAAGATCAGGACTTCTGCTTATGAAACATTGAACGAGG TTGTTAGGTCGTCCAATATTGTGGAAACATCTCAAATTATTTTGGAACTGCTCAAAAGCGTCTTGCATAAGTTGGGGCAGACTATAGATCTTCAAATTGT CTCATCAGACGATAGAGAGAAGCAAGGGGACTTGCAAGCATCCCTTTGTGCTGTTATCCAGGTGATTGTCCAAAAGCTTAGCAGCACTGATGAGACCAAG CCCAGTATACTTCAGGCTGCAGATACAATTATGTTTCTGTTCCTCAGGGTTTTTGCTTGCCGCAGATCTACTGTGCACGAGGAAGCAATGCTTGCAATTG GTGCACTGGCTCATGCCTCTGGTCCAGAATTTGAGAAGTACATGCCTGAGCTATATAAGTACCTGGAGATGGGATTACAGAATTTTGAGGAATATGAGGT TTGTGCCATCACAGTTGGGGTGATTGGTGACATTTGCCGTGCATTGGAGGACAAGGTCTTACCTTACTGTGATGGGATCATGAACCACCTTGTCCGCAAT CTCCAAAGTGCTGAACTCCACCGGTCAGTTAAGCCTCCAATATTTGCCTGCTTTGGTGATGTTGCTCTTGGGATAGGTGAGCAATTCTCTAAGTACGTTG AGCCTACAGTAGCAATGATGCGGAGCGCTGCTGAGGTCTGTGCTCAGATGGACAATAGTGATGAGGAGTTGATGGATTATGGCAACCAGCTTAAGCGTAG CATATTTGAAGCTTATTCTGGTATTCTTCAGGGATTCAAAGATTCCAAGCCTGAGTTGATGCTGCCACATGCTGGTCATCTTTTCCAGTTCATAGAAGTG GTTTTCAGAGAGAAATATAGGGATGAGAGTGTCACAAAAGCAGCAGTTGCCGTGATGGGTGATCTGGCGGATGCTCTTGGTCCTAACACAAAGATACTGT TCAAAGACAACGCATTCTGCATTCAATTTCTTGGCGAGTGTCTTCAATCCGACGACGAACATCTCAAAGAGACTGCAAACTGGACCCAAGTGATGATCGC TCGCGTTGTTTCATGA
AA sequence Show only first row Show all	>Potri.016G123600.2 pacid=42809738 polypeptide=Potri.016G123600.2.p locus=Potri.016G123600 ID=Potri.016G123600.2.v4.1 annot-version=v4.1 MAMEITQFLLAAQSPDANIRTQAEASLRQFQEQSLPLFLLSLSVELANNEKPLESRRLAGIVLKNSLDAKDSVRKEHLVQQWMAIEISMKAQIKDLLLRT LGSSASEARHTSAQVIAKVASIEIPRKQWPELIGSLLKNMTQQDSPAALKQATLETLGYVCEEISHQDLVQDEVNSVLTAVVQGMNLAEHSCEVRLAATK ALYNALDFAQTNFENDMERNYIMKVVCETAISKEADIRQAAFECLVSIASTYYDVLEPYMQTLFQLTSNAVKGDEESVALQAIEFWSSICDEEIELQEYG TLEGGDSGSTHSRFIEKALPYLVPLLLDTLLKQEEDQDQDDSIWNISMSGGTCLGLVARTVGDSVVKLVMPFVEGNILKPDWHCREAATYAFGSILEGPS LETLGPLVSNGLDFLLNAMRDENNHVKDTTAWALSRIFEFLHCPASGFSVVSPENLERIVTVLLESINDAPNVAEKVCGAIYYLAQGYEDAGTNSSLLTQ YIPRIISELLKTAERSDGSDSKIRTSAYETLNEVVRSSNIVETSQIILELLKSVLHKLGQTIDLQIVSSDDREKQGDLQASLCAVIQVIVQKLSSTDETK PSILQAADTIMFLFLRVFACRRSTVHEEAMLAIGALAHASGPEFEKYMPELYKYLEMGLQNFEEYEVCAITVGVIGDICRALEDKVLPYCDGIMNHLVRN LQSAELHRSVKPPIFACFGDVALGIGEQFSKYVEPTVAMMRSAAEVCAQMDNSDEELMDYGNQLKRSIFEAYSGILQGFKDSKPELMLPHAGHLFQFIEV VFREKYRDESVTKAAVAVMGDLADALGPNTKILFKDNAFCIQFLGECLQSDDEHLKETANWTQVMIARVVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08943			ARM repeat superfamily protein...		Potri.016G123600 [exp]	0	1
AT4G32910			unknown protein		Potri.018G044300 [exp]	4.00	0.7592
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.001G155200 [exp]	13.74	0.7118	Pt-HOS1.2
AT1G07615			GTP-binding protein Obg/CgtA (...		Potri.001G239600 [exp]	19.26	0.6922
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G133500 [exp]	27.11	0.6966
AT5G65750			2-oxoglutarate dehydrogenase, ...		Potri.010G209000 [exp]	28.39	0.6761
AT1G11320			unknown protein		Potri.005G242900 [exp]	29.25	0.7020
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	30.88	0.6811
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.018G049700 [exp]	32.86	0.6494
AT1G63660			GMP synthase (glutamine-hydrol...		Potri.003G128200 [exp]	34.52	0.6907
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.001G295100 [exp]	48.90	0.6176

Compare expression of checked genes

Potri.016G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.