Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51760 87 / 7e-20 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022661 [exp] 95 / 2e-22 AT3G51760 79 / 6e-17 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3), Protein of unknown function (DUF688) (.4) Lus10012510 [exp] 96 / 9e-22 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [poplar] [flax] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Potri.016G123700.1 pacid=42809167 polypeptide=Potri.016G123700.1.p locus=Potri.016G123700 ID=Potri.016G123700.1.v4.1 annot-version=v4.1 ATGGAAGAAAATAGTGTGTTTATGGAAGAAAATAGTGAACAAGGGATCGATGTCAATCGCCCGAGAAAGCTGAACTTAAACCTGCCCCTCTTATCGACTA GGCGGCTGGGTGGCCACGCCGGTAAGGAAGAAACCTGTTATGCAACAAAGTCACAGGCTGCTTTACAGGATACGAGTGATAGGATCCCATTTTGTTGGGA ACAAGCTCCTGGCAAGCCCAAGGACGGGGATAGTAATGACATCCATGAAGCAGGAACTCCTCAGCCGAGGCTCCCACCATGCAGATGGCATCTACAAAAT GAAGCAGCAAAAAATGGCGACCCCAATTGTTTCGTCAGCCTGGATGATCATGATGATGGTTGTGATGCTGATGCTGATGCTGATGACGATGACGATGGCG ATGGCGAAGAGATTGACGTGTTTTCAGATGCCATAGATGTTTTGTCATTGACAGAAGCAATAGACATTGCCCAGAAATCCAACGATGGTCACAGACTAGA CAGGCTAAATTTAGAGAGTGTGAACGCAACTGATAGCCAGTCTCTAAATTTCATGATGGAGCGGTTTCTGCCGGATGCCACTGCATTAGCTGCATCATCT GCACTTTGCGCGTTCAGTAATCTCAACAAGAAGCTCCCATATCCATACAATTATTCAGAGGAGTACGTCTCAAGAACAGTAGGGCAATCACATCCATCAG AGGCTTCACATAAAGGTTGTGGCCTGGAACTCCTGTTCCCTTGGCGCTTGAAGCACAAGCTCTGTGGTGTAAAGAGTCCTGCGAGACAAGTCTCACCAAA TGTCCAGCCTCAGTACTGTTCTACAAAACAAAAGAAACTCTGTTCACTTAATAGGCCTTTGAGAGATCTACATAAAGATATTTGA
AA sequence Show only first row Show all	>Potri.016G123700.1 pacid=42809167 polypeptide=Potri.016G123700.1.p locus=Potri.016G123700 ID=Potri.016G123700.1.v4.1 annot-version=v4.1 MEENSVFMEENSEQGIDVNRPRKLNLNLPLLSTRRLGGHAGKEETCYATKSQAALQDTSDRIPFCWEQAPGKPKDGDSNDIHEAGTPQPRLPPCRWHLQN EAAKNGDPNCFVSLDDHDDGCDADADADDDDDGDGEEIDVFSDAIDVLSLTEAIDIAQKSNDGHRLDRLNLESVNATDSQSLNFMMERFLPDATALAASS ALCAFSNLNKKLPYPYNYSEEYVSRTVGQSHPSEASHKGCGLELLFPWRLKHKLCGVKSPARQVSPNVQPQYCSTKQKKLCSLNRPLRDLHKDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51760			Protein of unknown function (D...		Potri.016G123700 [exp]	0	1
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.017G054500 [exp]	4.12	0.9040
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.010G111700 [exp]	12.96	0.8608
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	14.28	0.8888
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	16.34	0.8890
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G012300 [exp]	19.79	0.8931
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Potri.001G314400 [exp]	20.83	0.8844
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	22.09	0.8833
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	29.51	0.8700
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.016G067300 [exp]	30.74	0.8870
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.008G093500 [exp]	31.30	0.8817

Compare expression of checked genes

Potri.016G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.