Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51770 1415 / 0 ATEOL1, ETO1 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) AT5G58550 949 / 0 EOL2 ETO1-like 2 (.1.2) AT4G02680 784 / 0 EOL1 ETO1-like 1 (.1) AT3G04240 48 / 5e-05 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103400 [exp] 1653 / 0 AT3G51770 1399 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.009G075300 [exp] 1183 / 0 AT3G51770 1206 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.001G280100 [exp] 1176 / 0 AT3G51770 1192 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Potri.002G048300 [exp] 839 / 0 AT4G02680 1293 / 0.0 ETO1-like 1 (.1) Potri.005G214400 [exp] 830 / 0 AT4G02680 1264 / 0.0 ETO1-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022660 [exp] 1173 / 0 AT3G51770 1231 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10002206 [exp] 1053 / 0 AT3G51770 1089 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012238 [exp] 1050 / 0 AT3G51770 1092 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031859 [exp] 1032 / 0 AT3G51770 1088 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10031289 [exp] 1023 / 0 AT3G51770 1083 / 0.0 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10022084 [exp] 817 / 0 AT4G02680 1267 / 0.0 ETO1-like 1 (.1) Lus10012472 [exp] 187 / 3e-54 AT3G51770 230 / 2e-70 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010040 [exp] 141 / 4e-39 AT3G51770 165 / 3e-48 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10012510 [exp] 175 / 2e-37 AT3G51770 178 / 3e-35 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2) Lus10010041 [exp] 81 / 6e-18 AT3G51770 76 / 3e-17 ARABIDOPSIS ETHYLENE OVERPRODUCER 1, tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.016G123800.5 pacid=42809367 polypeptide=Potri.016G123800.5.p locus=Potri.016G123800 ID=Potri.016G123800.5.v4.1 annot-version=v4.1 ATGCAACACAATATATTCACGACAATGCGTAGCTTGAAATTCCCGGAGGGATGTAAAGGAACTCAAGTTTATGCTATCAATCCAACCGGCGGTGAAGGTG GCGGCGGCGGCTGTGGCGGTAAGGTTGGGGAGAAGTTTTTGCAACACTTGCAAGATCTAAGAGCGAATTCGATTCGGACGAAATCGAGTAGAAATTCGCA TCCACCGACTAACCAGACAACAAGAACTAATGTATCAGTCGAAAGTTTATTGCCAGCTGGTTCTCCGACCGTTGATCTCATGGAGCCACATATTGAGCCG TGTCTTAAATCTGTGGATTTCGTCGAATCATTAGCTGCTGTCTATAAAAAGGTTGAGGATTCTTCACAATTTGAGAAATCAGAGAGATTTTTAGAACAAT GCGCGGTGTTTAAGGGTTTATGTGATCCGAAATTGTTTCGGAATAGTCTAAGGGGTGCGAGACAGCATGCTGTGGATGTGCATTCCAAGGTTGTTTTGGC TTCGTGGTTGAGGTTTGAGAGGAGGGAGGATGAGTTGATTGGTTTGTCGGCTATGGATTGTTGTGGAAGAAATTTAGAATGCCCTAGGGCTTGTTTGGTG CCGGGGTATGATCCGGAATCGGTGAATGATCCTTGCGTGTGTTCGAGAGGGGAGCTGGAGGGGGGTGTTTTGATGGGGAACGGAGGAGAATGCTCGACTT CGGATATCGATGAGGCTGCTGGAGGCGGTGGTGGTGATGATGATGATTGTGATATGTCATTTTGTATTGGTGATGATGAGATCAGGGGTGTGAGGTATAA TGTGGCGTCGCTTTCGAGGCCTTTTAGATCAATGTTGTATGGGGAGTTTAAAGAATCAAGGAGGGAGAAGATAAATTTTTCGCAGAATGGGATATCAGCA GAGGGAATGAGGGCGGCAATGATATTTAGCAGGACAAAAAGATTGGGTTCGTTTGAACTAAAGATTGTTTTAGAGCTTCTTTCCTTGGCAAACAGGTTTT GCTGTGAGGAATTGAAGTCGGCTTGTGATGCCCATTTGGCATCTTTGGTTTGTGATATGGAGGAAGCCATGATGCTAATTGAGTATGGATTGGAGGAGGG TGCGTATCTTTTGGTGGCAGCTTGTTTACAGGTGATTTTGAGAGAGCTTCCATTTTCAATGCACAATCCTTATGTGATGAAACTGTTTTGTGGATCTGAG GGTAGGGAGAGATTGGCTTCGGTAGGCCATGCTTCATTTTTGTTGTATTATTTTCTGAGCCAGATTGCTATGGAGGAAGAGATGAAATCTAACAACACTG TGATGCTTTTGGAGAGACTGGGAGAATGTGCCACCGAAGATTGGCAGAAACAGCTTGCCTATCACCAGTTAGGTGTTGTTATGCTCGAAAGAACAGAGTA TAAAGATGCCCAGAAATGGTTCGAAGAAGCAGTTGAAGCAGGTCATATATACTCGTCGGTGGGTGTTGCAAGGGCCAAATACAATCGCGGGCACAAGTAT TCAGCATACAAGATGATGAACTCGCTGATTTCTGATCATACACCAGTTGGGTGGATGTACCAAGAGAGGTCTTTATATTGTACTGGAAAGGAGAAGCTGA TGGATTTGAATACAGCAACTGAATTGGATCCAACACTTTCATTCCCATACAAGTGTCGGGCTGTTTTGTTGGTGCAGGAGAACAAACTTGAATCAGCTAT CTCAGAACTAAATAAAATTATTGGTTTCAAAGTCTCTCCTGATTGTCTTGAATTACGGGCCTGGATTTCCATTGTGTTGGAGGATTATGAAGGAGCCCTA AGAGATGTCCGTGCTCTTTTGACTTTGGATCCAAATTACATGATGTTTTATGGGAAGAAGCATGGTGACCAACTAGTAGAACTCCTCCGTCCTCTGGTTC AGCAATACAGTCAGGCAGACTGCTGGATGCAACTGTATGATAGATGGTCCTCTGTTGACGATATAGGCTCCCTTGCTGTCGTACACCAAATGCTGGCAAA TGACCCTAGGAAGAGCCTTCTATGGTTCCGACAATCTCTTCTTCTTTTACGGCTAAATTGTCAAAAGGCTGCGATGCGAAGTTTGCGGCTGGCTAGAAAT TATTCTACTTCCGACCATGAGAAACTTGTCTATGAAGGATGGATCTTGTATGACACTGGGCACCGTGAAGAAGCACTATCCAAGGCTGAGCAGTCTATTT CAATTCAGAGATCATTTGAAGCCTTTTTCCTTAAAGCTTATGCTTTAGCAGATTCAAGCCTTGATCCCGAGTCCTCAAAGTATGTTATCCAACTTTTGGA GGAGGCTCTTAGGTGCCCTTCAGATGGCCTCCGGAAAGGACAAGCACTGAACAATCTAGGGAGTGTATATGTTGACTGTGAGAAGTTTGATCTTGCCGCT GACTGTTACATGAGCGCACTTGAGATCAAGCATACAAGAGCACATCAAGGTCTGGCACGTGTATATCATCTAAAAAATCAACGGAAAGCTGCATATGATG AGATGACAAAACTGATTGAGAAAGCAAGGAATAATGCTTCAGCTTATGAGAAGCGTTCAGAGTACTGTGATCGTGACATGGCAAAGAGTGATCTTAGCAC AGCAACACAACTAGATCCATTGAGGACATACCCATACAGATACAGGGCAGCAGTTTTAATGGATGATCACAAAGAAGCGGAAGCCATAAGAGAGCTTGCA AGGGTCATAGCTTTCAAGCCAGACTTACAGCTGCTGCATCTTCGAGCAGCATTTTATGATTCAATGGGCGATACTAGCTGCACCCTTAGAGACTGTGAAG CAGCTCTCTGTCTTGATCCCAATCACACTGGTACCATTGAGCTCTATAAGAGAGCACGGGAACGGGGAAATGAACCAGAAAAATGA
AA sequence Show only first row Show all	>Potri.016G123800.5 pacid=42809367 polypeptide=Potri.016G123800.5.p locus=Potri.016G123800 ID=Potri.016G123800.5.v4.1 annot-version=v4.1 MQHNIFTTMRSLKFPEGCKGTQVYAINPTGGEGGGGGCGGKVGEKFLQHLQDLRANSIRTKSSRNSHPPTNQTTRTNVSVESLLPAGSPTVDLMEPHIEP CLKSVDFVESLAAVYKKVEDSSQFEKSERFLEQCAVFKGLCDPKLFRNSLRGARQHAVDVHSKVVLASWLRFERREDELIGLSAMDCCGRNLECPRACLV PGYDPESVNDPCVCSRGELEGGVLMGNGGECSTSDIDEAAGGGGGDDDDCDMSFCIGDDEIRGVRYNVASLSRPFRSMLYGEFKESRREKINFSQNGISA EGMRAAMIFSRTKRLGSFELKIVLELLSLANRFCCEELKSACDAHLASLVCDMEEAMMLIEYGLEEGAYLLVAACLQVILRELPFSMHNPYVMKLFCGSE GRERLASVGHASFLLYYFLSQIAMEEEMKSNNTVMLLERLGECATEDWQKQLAYHQLGVVMLERTEYKDAQKWFEEAVEAGHIYSSVGVARAKYNRGHKY SAYKMMNSLISDHTPVGWMYQERSLYCTGKEKLMDLNTATELDPTLSFPYKCRAVLLVQENKLESAISELNKIIGFKVSPDCLELRAWISIVLEDYEGAL RDVRALLTLDPNYMMFYGKKHGDQLVELLRPLVQQYSQADCWMQLYDRWSSVDDIGSLAVVHQMLANDPRKSLLWFRQSLLLLRLNCQKAAMRSLRLARN YSTSDHEKLVYEGWILYDTGHREEALSKAEQSISIQRSFEAFFLKAYALADSSLDPESSKYVIQLLEEALRCPSDGLRKGQALNNLGSVYVDCEKFDLAA DCYMSALEIKHTRAHQGLARVYHLKNQRKAAYDEMTKLIEKARNNASAYEKRSEYCDRDMAKSDLSTATQLDPLRTYPYRYRAAVLMDDHKEAEAIRELA RVIAFKPDLQLLHLRAAFYDSMGDTSCTLRDCEAALCLDPNHTGTIELYKRARERGNEPEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Potri.016G123800 [exp]	0	1
AT3G11760			unknown protein		Potri.006G201200 [exp]	1.73	0.7166
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Potri.006G121200 [exp]	4.69	0.6296
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	5.38	0.7197
AT4G32760			ENTH/VHS/GAT family protein (....		Potri.018G039100 [exp]	6.00	0.7178
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.007G032500 [exp]	13.41	0.6322
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	20.49	0.6420
AT5G51740			Peptidase family M48 family pr...		Potri.012G131100 [exp]	22.49	0.5996
AT1G70750			Protein of unknown function, D...		Potri.010G109900 [exp]	24.89	0.6658
AT3G05900			neurofilament protein-related ...		Potri.005G001700 [exp]	29.88	0.5641
					Potri.001G241250 [exp]	30.72	0.6413

Compare expression of checked genes

Potri.016G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.