Plant FIBer expression Database

Potri.016G123900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01590 688 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012500
[exp]
605 / 0 AT5G01590 644 / 0.0 unknown protein
Lus10022672
[exp]
585 / 0 AT5G01590 629 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0673 GYF PF14237 GYF_2 GYF domain 2
Representative CDS sequence
>Potri.016G123900.2 pacid=42809185 polypeptide=Potri.016G123900.2.p locus=Potri.016G123900 ID=Potri.016G123900.2.v4.1 annot-version=v4.1
ATGGCTTCAATTAGCTTCAACAACAACTTCTTTGATAACTGGTTCAATAAGCCTCCAAAGCCTCTCCCTTCCATCAACCTTCTCTCTTTAATCTCCTTCA
AAAACAGCAGCAAAACCCCGAATTTCTCTTCTCTCTCAATCTCAAACCCATTCAAGAAACCCCAAAAACCCGACCCGGACCCGACCCAGCAACAGCCCGG
TTACTACAGACAAATGATTGACCAGTATTTCTGGGAATGTGAGAATCTACCTGATTACCGTCACACCCCAGAAGTGGAAAAGATCCTAAACGAAGACCCG
GTTTTTGAAAAGAAAGAAAACCCGACCCCAGAAGAAATTGAGGAGAATGAGAGATGGTGGGCTGAGTTTCGGGCCAGCCCAGTTGTTAAGTTCTTGACCC
GAGCTCATCAAATTGCCGACGAAATTAATGAGATGGAATTGAAGGCGAATTCGATTCCGTATAGATGGGAAGATAGGAAATTTTGGCAGGCATTGCCGCA
TGTAACTGGGCCGGACGGCCGGCCAATGCCGCGGAAGGCGATAATCACGAAGAAAGAGAGTGATGATAAGTTTTGGGATTTTGCCAGGCAGTTCTTTTTT
GGGCTTTGGGGTTTTAGGCAAAGACCTTATCCGCCTGGTCGGCCCATTGATGTTGCTCAAGCTATTGGGTTTAAGCGTCTTGAAAAGAGATACTATGATT
TTATTATGAAAACTGGTGGGTGGTACTATAAGGACCGGTTGGGACGAACACGAGGGCCAATGGAGCTTATACAGCTGAAAACGGCTTGGGGTGGTGGGAT
AATTGATAAGGACACTTTTATATGGGGTGATGACATGGATGAATGGGCACCGATACATATGATTTACGGCATGGAGCGTGCAATTGCCACTTGGGAAGTC
AGACTTGGTGCTGCGGCAACGGCTTTCCTTCACAAATTACAGAAAGGCATACCTCCATGGGTTCCTTTGAAGGGACGTGAACAGAAAACCTATAAGCAGA
TGCAGCAAGAAGCTGTAGAAAGCAAGAGACGTGACTTAGCTGTTTTGGAAGCTAATGGTGGTATTTGGCCAGGAGTTAGAATTCCCAGCCATGCTCTTTT
TCTTTGGGCTAGTGGCCCTGAATTGACAAATATTTTGGAACAGGACCATATGCCAAACATATTCATTCCAAAAGATCTCAGGCTTCAATTGGCGAAAATT
ATCCCTGGCTTAAGGCCATGGGAGGTTCTAAGCATTGAGCAAGCGATGGATCAAATAACATACGGTGGGCAGTGGTATCGGGAACCTCTTGGCTCATACA
CGACAGGGCCTCCATACATCAGACATTGGAACAAGGATGTTAAGAGAATACTTCAGATTTTCTACACTCTTAGTACCCGGGTTTACAGCAAACTACAGCG
CACAATTCCCGGTATCGATACCATAATGGAGAAAGTCCATGTTGATTCTGCCTCTAGGGGTGCCAGGCGCAAGCAGAAGAGGGAGGCGCAATTAAAGGCA
GAGCAGGAGGAAGCCTTGTATGGTCGAGGGAGGACTGATTCATAG
AA sequence
>Potri.016G123900.2 pacid=42809185 polypeptide=Potri.016G123900.2.p locus=Potri.016G123900 ID=Potri.016G123900.2.v4.1 annot-version=v4.1
MASISFNNNFFDNWFNKPPKPLPSINLLSLISFKNSSKTPNFSSLSISNPFKKPQKPDPDPTQQQPGYYRQMIDQYFWECENLPDYRHTPEVEKILNEDP
VFEKKENPTPEEIEENERWWAEFRASPVVKFLTRAHQIADEINEMELKANSIPYRWEDRKFWQALPHVTGPDGRPMPRKAIITKKESDDKFWDFARQFFF
GLWGFRQRPYPPGRPIDVAQAIGFKRLEKRYYDFIMKTGGWYYKDRLGRTRGPMELIQLKTAWGGGIIDKDTFIWGDDMDEWAPIHMIYGMERAIATWEV
RLGAAATAFLHKLQKGIPPWVPLKGREQKTYKQMQQEAVESKRRDLAVLEANGGIWPGVRIPSHALFLWASGPELTNILEQDHMPNIFIPKDLRLQLAKI
IPGLRPWEVLSIEQAMDQITYGGQWYREPLGSYTTGPPYIRHWNKDVKRILQIFYTLSTRVYSKLQRTIPGIDTIMEKVHVDSASRGARRKQKREAQLKA
EQEEALYGRGRTDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01590 unknown protein Potri.016G123900
[exp]
0 1
AT1G32500 ABCI7, ATNAP6 ATP-binding cassette I7, non-i... Potri.003G089700
[exp]
1.00 0.9768
AT1G80480 PTAC17 plastid transcriptionally acti... Potri.003G030100
[exp]
7.74 0.9729
AT2G38660 Amino acid dehydrogenase famil... Potri.006G114100
[exp]
8.36 0.9477
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Potri.004G087100
[exp]
9.21 0.9599
AT1G67660 Restriction endonuclease, type... Potri.010G054800
[exp]
9.79 0.9685
AT3G06200 P-loop containing nucleoside t... Potri.008G200600
[exp]
10.39 0.9510
AT1G76760 ATY1, TRX-Y1 thioredoxin Y1 (.1) Potri.002G066800
[exp]
10.95 0.9474
AT1G06730 pfkB-like carbohydrate kinase ... Potri.005G220400
[exp]
12.12 0.9577
AT1G59840 CCB4 cofactor assembly of complex C... Potri.008G191900
[exp]
12.84 0.9545
AT3G02060 DEAD/DEAH box helicase, putati... Potri.014G145000
[exp]
14.49 0.9502

Potri.016G123900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.