Plant FIBer expression Database

Potri.016G124000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G103600
[exp]
120 / 3e-35 AT3G51750 40 / 8e-05 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.016G124000.2 pacid=42809018 polypeptide=Potri.016G124000.2.p locus=Potri.016G124000 ID=Potri.016G124000.2.v4.1 annot-version=v4.1
ATGGAAGATGGCGTGACAATAGCTGAAAGCTTGTTGCATCTTGAAGAAGAAGAAGATGATGATGAGAAAGTTAATCTTCGAGAAAGTGGAGAAGATAGGC
CAAGTGGGTCATTACTAAACCATATCTTCTCAAACCTGGTCTCTAGAGGGGAAGCTGATCATGAAGAAAAAGGAGGTAAAGAAGAGAATGGAGAGAATAG
AGGTGGGCTACTGGACAATATCATATCCAACTTGGTTTCTCCTTCGAGTAAAAAAGAACAGCATGAAGTTTCCCAAGCTAGAGATGGCGGAGGAGCAGCT
GAAGATCAAGCACAAAAGAAACAGAAGGTAACAGTAGTTGATGAAGAGAGTGAAAAAGTGAAGGCTGAAGAGGAGGGTGGTGCAGGCATCATTGATCACA
TTGTTTCCCACTTTCTTACATCTCTTCCAGGTGCTTATATTAAGAAATTAATGTTGCTTAGCTGCTTATATTAA
AA sequence
>Potri.016G124000.2 pacid=42809018 polypeptide=Potri.016G124000.2.p locus=Potri.016G124000 ID=Potri.016G124000.2.v4.1 annot-version=v4.1
MEDGVTIAESLLHLEEEEDDDEKVNLRESGEDRPSGSLLNHIFSNLVSRGEADHEEKGGKEENGENRGGLLDNIISNLVSPSSKKEQHEVSQARDGGGAA
EDQAQKKQKVTVVDEESEKVKAEEEGGAGIIDHIVSHFLTSLPGAYIKKLMLLSCLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51750 unknown protein Potri.016G124000
[exp]
0 1
AT1G07985 Expressed protein (.1) Potri.001G266500
[exp]
2.82 0.7760
AT5G62040 BFT brother of FT and TFL1, PEBP (... Potri.015G141300
[exp]
3.74 0.8555 Pt-PNFTL1.1
AT3G62930 Thioredoxin superfamily protei... Potri.002G208700
[exp]
5.91 0.7583 PtrGrx20
AT5G51060 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THAL... Potri.015G109800
[exp]
9.48 0.7757 RHD2.2
AT5G20280 SPSA1, ATSPS1F sucrose-phosphate synthase A1,... Potri.018G025100
[exp]
10.48 0.6635 SPS.2
AT5G42200 RING/U-box superfamily protein... Potri.005G244500
[exp]
10.48 0.7238
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Potri.004G174100
[exp]
10.95 0.6749 Pt-ERD7.1
AT2G37870 Bifunctional inhibitor/lipid-t... Potri.008G141000
[exp]
14.49 0.6902
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.019G014388
[exp]
14.96 0.6627
AT1G61740 Sulfite exporter TauE/SafE fam... Potri.011G030900
[exp]
20.14 0.7332

Potri.016G124000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.