Plant FIBer expression Database

Pt-SOF.3 (Potri.016G124700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-SOF.3
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01600 294 / 8e-101 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
AT2G40300 284 / 9e-97 ATFER4 ferritin 4 (.1)
AT3G56090 265 / 2e-89 ATFER3 ferritin 3 (.1)
AT3G11050 265 / 2e-89 ATFER2 ferritin 2 (.1)
AT3G61010 95 / 3e-22 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G124900
[exp]
449 / 2e-162 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.006G103900
[exp]
388 / 6e-138 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.010G184500
[exp]
302 / 4e-104 AT3G11050 311 / 2e-107 ferritin 2 (.1)
Potri.008G072700
[exp]
295 / 4e-101 AT3G11050 330 / 9e-115 ferritin 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012233
[exp]
343 / 4e-120 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10002865
[exp]
337 / 8e-118 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10022673
[exp]
317 / 6e-110 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012499
[exp]
314 / 7e-109 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10007523
[exp]
298 / 3e-102 AT2G40300 360 / 4e-127 ferritin 4 (.1)
Lus10017433
[exp]
296 / 2e-101 AT2G40300 366 / 3e-129 ferritin 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00210 Ferritin Ferritin-like domain
Representative CDS sequence
>Potri.016G124700.2 pacid=42810515 polypeptide=Potri.016G124700.2.p locus=Potri.016G124700 ID=Potri.016G124700.2.v4.1 annot-version=v4.1
ATGGCTTCAACTTTTTCGAGAAGTGTTTCTGCCTTTTCTCTTGCAACAAAGCAAGGGGACGCTGCTAGTGGTGGGCATGGCATTTCTTCCTTGCCTTTGT
TTTCCAGAAAGAAAAGGAACACTAGTCTTGTAGTTTCTTCTGCCAGTGGAACTCTTACCGGTCTAGTGTTCCAGCCATTTGAAGAGGTGAAGAGGGAGGA
ATTTCTTGTTCCTATTTCTCGTCAGGTTTCTCTTGCTCGTCAGTTCTATGTGGATGAGTGTGAAGCTGCCATTAACGAGCAGATCAATGTGGAGTATTCT
GCTTCCTACGTGTACCATGCCATGTTTGCCTATTTTGACAGGGATAACATTGCTCTCAAAGGCCTAGCCAAATTCTTCAAGGAATCAAGTGAAGAAGAAA
GAGAACATGCTGAGAAGCTCATGAAGTATCAGAATATACGAGGAGGGAAAGTGGTGCTTCACTCTATACTGACACCCGTTTCTGAATTTGAGCATGTTGA
GAAAGGAGATGCACTATATGCTATGGAACTGGCATTGTCATTGGAGAAGTTGACAAATGAGAAACTACTGAGCCTGCACAAGGTGGCAGATGAGAACAAT
GATCCACAAATGCAAGATTTCATCGAAAGCGAGTTTTTGGAAGAGCAGGTTGAATCCATTAAGAAGATAGCAGAATATGTCACTCAATTGCGGATGGTTG
GAAAAGGCCATGGAGTATGGCACTTTGATCAGACGCTCCTCCATGAGGTGTGA
AA sequence
>Potri.016G124700.2 pacid=42810515 polypeptide=Potri.016G124700.2.p locus=Potri.016G124700 ID=Potri.016G124700.2.v4.1 annot-version=v4.1
MASTFSRSVSAFSLATKQGDAASGGHGISSLPLFSRKKRNTSLVVSSASGTLTGLVFQPFEEVKREEFLVPISRQVSLARQFYVDECEAAINEQINVEYS
ASYVYHAMFAYFDRDNIALKGLAKFFKESSEEEREHAEKLMKYQNIRGGKVVLHSILTPVSEFEHVEKGDALYAMELALSLEKLTNEKLLSLHKVADENN
DPQMQDFIESEFLEEQVESIKKIAEYVTQLRMVGKGHGVWHFDQTLLHEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Potri.016G124700
[exp]
0 1 Pt-SOF.3
AT2G45900 Phosphatidylinositol N-acetygl... Potri.001G103400
[exp]
4.58 0.9418
AT1G29740 Leucine-rich repeat transmembr... Potri.011G073091
[exp]
7.07 0.9240
AT2G48020 Major facilitator superfamily ... Potri.002G212900
[exp]
13.52 0.8997
AT1G56010 NAC NAC1, ANAC021, ... Arabidopsis NAC domain contain... Potri.007G065400
[exp]
14.00 0.9390 Pt-NAC1.1
AT2G28690 Protein of unknown function (D... Potri.009G027100
[exp]
15.49 0.9330
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G033600
[exp]
17.20 0.9333
AT3G45210 Protein of unknown function, D... Potri.009G014100
[exp]
21.86 0.8798
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134425
[exp]
22.44 0.9289
AT1G22370 ATUGT85A5 UDP-glucosyl transferase 85A5 ... Potri.004G172700
[exp]
22.64 0.9170
AT4G32250 Protein kinase superfamily pro... Potri.006G255700
[exp]
27.27 0.9232

Potri.016G124700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.