Plant FIBer expression Database

Potri.016G124800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G313000
[exp]
40 / 3e-05 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Potri.017G052300
[exp]
39 / 9e-05 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Potri.017G052166
[exp]
39 / 9e-05 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Potri.001G312600
[exp]
37 / 0.0004 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000993
[exp]
40 / 3e-05 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1)
PFAM info
Representative CDS sequence
>Potri.016G124800.1 pacid=42809500 polypeptide=Potri.016G124800.1.p locus=Potri.016G124800 ID=Potri.016G124800.1.v4.1 annot-version=v4.1
ATGGGGTATCGGCACGGTGATGTTAAGAGAGATCAAGTTGGGAAGCTTGTTATAGAGTTAATGGAGGGAGAAAAGGGTAAAGAAATGAAAAGGAAGGCGA
TGGAATGGAAGACAAAGGCAGAAGAAGCTGCCAGCCCCGGTTGTTCATTGCAAGAACTTCGAAAATCTGCTAGCAGACATTCTTTTGGTGCAAAAAACAA
GAAATAA
AA sequence
>Potri.016G124800.1 pacid=42809500 polypeptide=Potri.016G124800.1.p locus=Potri.016G124800 ID=Potri.016G124800.1.v4.1 annot-version=v4.1
MGYRHGDVKRDQVGKLVIELMEGEKGKEMKRKAMEWKTKAEEAASPGCSLQELRKSASRHSFGAKNKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G124800
[exp]
0 1
AT1G28130 GH3.17 Auxin-responsive GH3 family pr... Potri.001G069000
[exp]
11.18 0.8833 7
AT4G37710 VQ motif-containing protein (.... Potri.014G006400
[exp]
13.49 0.8755
Potri.019G014366
[exp]
34.38 0.7928
AT3G55560 AT-hook AHL15, AGF2 AT-hook motif nuclear-localize... Potri.010G200100
[exp]
36.33 0.8499
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Potri.006G154500
[exp]
38.98 0.8293
Potri.001G427210
[exp]
39.11 0.8309
AT1G70140 ATFH8 formin 8 (.1) Potri.010G037900
[exp]
64.37 0.8304
AT3G42180 Exostosin family protein (.1.3... Potri.018G124832
[exp]
64.62 0.8416
AT3G28960 Transmembrane amino acid trans... Potri.010G169000
[exp]
79.24 0.8390
AT5G25260 SPFH/Band 7/PHB domain-contain... Potri.018G022900
[exp]
86.62 0.8240

Potri.016G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.