Plant FIBer expression Database

SOF.2 (Potri.016G124900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SOF.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01600 264 / 4e-89 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
AT2G40300 253 / 2e-84 ATFER4 ferritin 4 (.1)
AT3G11050 234 / 1e-77 ATFER2 ferritin 2 (.1)
AT3G56090 233 / 6e-77 ATFER3 ferritin 3 (.1)
AT3G61010 71 / 9e-14 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G124700
[exp]
418 / 4e-150 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.006G103900
[exp]
344 / 2e-120 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.010G184500
[exp]
267 / 3e-90 AT3G11050 311 / 2e-107 ferritin 2 (.1)
Potri.008G072700
[exp]
261 / 5e-88 AT3G11050 330 / 9e-115 ferritin 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012233
[exp]
301 / 7e-104 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10002865
[exp]
296 / 1e-101 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10022673
[exp]
276 / 5e-94 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012499
[exp]
273 / 1e-92 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10007523
[exp]
258 / 9e-87 AT2G40300 360 / 4e-127 ferritin 4 (.1)
Lus10017433
[exp]
256 / 6e-86 AT2G40300 366 / 3e-129 ferritin 4 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00210 Ferritin Ferritin-like domain
Representative CDS sequence
>Potri.016G124900.1 pacid=42809294 polypeptide=Potri.016G124900.1.p locus=Potri.016G124900 ID=Potri.016G124900.1.v4.1 annot-version=v4.1
ATGGCTTCAACTTTTTCGAGAAGTGTTTCTGCCTTTTCTCTTGCAACAAAGCAAGGGGACGCTGCTAGTGGTGGGCATGGCATTTCTTCCTTGCCTTTGT
TTTCCAGAAAGAAAAGGAACACTAGTCTTGTAGTTTCTTCTGCCAGTGGTACTCTTACTGGTCTAGTGTTCCAGCCATTTGAAGAGGTGAAGAGAGAGGA
CTTTCTTGTTCCTATTTCTAGTCAGGTTTCTCTTTCTCGTCAGTTCTATGTGGATGAGTGTGAAGCTGCCATTAACGAGCAGATCAATGTGGAGTATTCT
GCTTCCTACGTGTACCATGCCTTGTTTGCCTATTTTGACAGGGATAACATTGCTCTCAAAGGCCTATCCAAATTCTTCAAGGAATCAAGTGAAGAAGAAA
GAGAACATGCTGAGAAGTTCATGAAGTATCAGAATATACGAGGAGGGAAAGTAGTGCTCCACTCTATACTGAAACCCGTTTCTGAATTTGAGCATGGTGA
CAAAGGAGATGCATTATATGCTATGGAACTAGCATTGTCTTTGGAGAAGTTGACAAATGAAAAACTACTGAACTTGCACAAGGTGGCAGATGAGAACAAT
GATCCACAATTGCAAGATTTCATCGATAGCGAGTTTTTGAAAGAGCAGGTTGAATCCATTAAGAAGATAGCAGAATATGTCACTCAATTGCGGATGGTTG
GAAAAGGCCATGGAGTATGGCACTTTGATCAGATGCTCCTCCATGCATGA
AA sequence
>Potri.016G124900.1 pacid=42809294 polypeptide=Potri.016G124900.1.p locus=Potri.016G124900 ID=Potri.016G124900.1.v4.1 annot-version=v4.1
MASTFSRSVSAFSLATKQGDAASGGHGISSLPLFSRKKRNTSLVVSSASGTLTGLVFQPFEEVKREDFLVPISSQVSLSRQFYVDECEAAINEQINVEYS
ASYVYHALFAYFDRDNIALKGLSKFFKESSEEEREHAEKFMKYQNIRGGKVVLHSILKPVSEFEHGDKGDALYAMELALSLEKLTNEKLLNLHKVADENN
DPQLQDFIDSEFLKEQVESIKKIAEYVTQLRMVGKGHGVWHFDQMLLHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01600 ATFER1 ARABIDOPSIS THALIANA FERRETIN ... Potri.016G124900
[exp]
0 1 SOF.2
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.008G183600
[exp]
5.91 0.7910
AT1G73100 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)... Potri.003G188700
[exp]
9.59 0.7830 SDG906,SUVH3.3
AT5G57685 LSB1, ATGDU3 LESS SUSCEPTIBLE TO BSCTV 1, A... Potri.006G173901
[exp]
9.79 0.7448
AT4G22360 SWIB complex BAF60b domain-con... Potri.006G010700
[exp]
15.29 0.7476
AT4G29190 C3HZnF AtOZF2 Arabidopsis thaliana oxidation... Potri.006G234300
[exp]
16.24 0.7642
AT1G64050 unknown protein Potri.001G098500
[exp]
17.32 0.7651
AT2G27230 bHLH LHW, bHLH156 LONESOME HIGHWAY, transcriptio... Potri.001G216900
[exp]
17.88 0.7554
AT5G49560 Putative methyltransferase fam... Potri.007G025600
[exp]
20.78 0.7556
AT1G25275 unknown protein Potri.015G114500
[exp]
22.97 0.7797
AT1G18560 BED zinc finger ;hAT family di... Potri.012G059200
[exp]
24.67 0.7623

Potri.016G124900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.