Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 420 / 5e-148 Peroxidase superfamily protein (.1) AT5G64120 417 / 4e-147 Peroxidase superfamily protein (.1) AT5G39580 410 / 2e-144 Peroxidase superfamily protein (.1.2) AT5G64110 363 / 1e-125 Peroxidase superfamily protein (.1) AT5G64100 343 / 5e-118 Peroxidase superfamily protein (.1) AT4G25980 307 / 3e-103 Peroxidase superfamily protein (.1) AT1G77100 278 / 2e-92 Peroxidase superfamily protein (.1) AT1G05260 267 / 5e-88 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G06720 264 / 1e-86 ATPA2 peroxidase 2 (.1) AT4G11290 263 / 1e-86 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069600 [exp] 412 / 2e-145 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 390 / 2e-136 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 275 / 3e-91 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 271 / 9e-90 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 271 / 9e-90 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 271 / 9e-90 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 271 / 9e-90 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 270 / 4e-89 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 270 / 5e-89 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007051 [exp] 477 / 9e-171 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 470 / 4e-168 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10012684 [exp] 454 / 1e-161 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 427 / 6e-151 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10015555 [exp] 382 / 4e-133 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1) Lus10020421 [exp] 317 / 1e-108 AT2G41480 266 / 9e-89 Peroxidase superfamily protein (.1) Lus10025535 [exp] 288 / 2e-94 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 282 / 1e-93 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10015127 [exp] 277 / 6e-92 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 277 / 7e-92 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.016G125000.1 pacid=42809895 polypeptide=Potri.016G125000.1.p locus=Potri.016G125000 ID=Potri.016G125000.1.v4.1 annot-version=v4.1 ATGAGCCAAAAAATAGTTTTAATGTTTCTTTTGCTGGCCATGGTTGGTACCACCATGGTGCAAGGCCAAGGCACTCGTGTTGGGTTTTATGCAACGACGT GCCGTAGGGCTGAATCCATTGTTCGGGCAACAGTCCAGTCTCATTTCACGTCTGATTCCTCTATTGCACCTGGGCTCCTCAGGATGCATTTCCATGATTG CTTTGTGAATGGTTGTGATGCTTCCATCCTCATTGATGGCGCTAATACTGAAAAAACTGCTAGGCCAAACCTTCTGTTGAGAGGATATGATGTCATTGCT GATGCCAAGACTCAGCTTGAAGCTGAGTGCCCTGGTGTTGTCTCATGTGCAGACATTCTAGCCCTTGCTGCTCGTGATTCTGTTGTTTTGACAAAGGGAC TCACTTGGCCAGTGCCCACAGGACGGAGAGACGGTAGGGTTTCATTGGCATCCGATACATCTAATTTGCCAGGTTTCACCGACTCTGTTGACGTGCAGAA ACAGAAGTTTGCAGCATTTGGTCTCAACGCTCAAGATCTTGTTACCCTTGTTGGAGGACACACCATAGGAACCACTGCTTGTCAATTCTTCAGTTACAGA CTGTACAATTTCACTACAACAGGAAATGGCGCGGACCCATCCATCAACCCTTCATTCGTCTCTCAACTACAGACACTCTGTCCACAGAATGGTGATGGGT CAAGGCGTATTGCTCTAGACACTGGTAGCCAAAATCGTTTTGATTCATCTTTCTTTTCAAATTTGAGAAGTGGTCAAGGAATACTTGAATCTGATCAAAA GTTATGGACTGATGCAACCACAAGAACTTTTGTCCAGCGCTTCCTTGGTGTCAGAGGCCTGGCTGGGCTTACGTTTGGTGCGGAGTTTGGCAGGTCCATG GTCAAGATGAGTAACATCGGTGTGAAAACCGGCACTAATGGTGAAATTCGAAGAGTGTGTTCTGCTATAAATTGA
AA sequence Show only first row Show all	>Potri.016G125000.1 pacid=42809895 polypeptide=Potri.016G125000.1.p locus=Potri.016G125000 ID=Potri.016G125000.1.v4.1 annot-version=v4.1 MSQKIVLMFLLLAMVGTTMVQGQGTRVGFYATTCRRAESIVRATVQSHFTSDSSIAPGLLRMHFHDCFVNGCDASILIDGANTEKTARPNLLLRGYDVIA DAKTQLEAECPGVVSCADILALAARDSVVLTKGLTWPVPTGRRDGRVSLASDTSNLPGFTDSVDVQKQKFAAFGLNAQDLVTLVGGHTIGTTACQFFSYR LYNFTTTGNGADPSINPSFVSQLQTLCPQNGDGSRRIALDTGSQNRFDSSFFSNLRSGQGILESDQKLWTDATTRTFVQRFLGVRGLAGLTFGAEFGRSM VKMSNIGVKTGTNGEIRRVCSAIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G41480			Peroxidase superfamily protein...		Potri.016G125000 [exp]	0	1
AT3G57630			exostosin family protein (.1.2...		Potri.006G054800 [exp]	1.73	0.8321
AT2G46370		FIN219, JAR1	JASMONATE RESISTANT 1, FAR-RED...		Potri.014G095500 [exp]	2.44	0.8254
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003100 [exp]	5.56	0.8791
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.006G214700 [exp]	6.00	0.8479
AT3G48880			RNI-like superfamily protein (...		Potri.001G373900 [exp]	9.16	0.8247
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Potri.002G022700 [exp]	9.38	0.7136
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017800 [exp]	11.83	0.7826
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.012G137550 [exp]	18.43	0.8315
AT3G14460			LRR and NB-ARC domains-contain...		Potri.017G121901 [exp]	21.02	0.7846
					Potri.017G018100 [exp]	22.22	0.7538

Compare expression of checked genes

Potri.016G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.