Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07030 436 / 2e-154 Mitochondrial substrate carrier family protein (.1) AT2G30160 414 / 1e-145 Mitochondrial substrate carrier family protein (.1) AT1G07025 140 / 1e-40 Mitochondrial substrate carrier family protein (.1) AT1G34065 134 / 1e-36 SAMC2 S-adenosylmethionine carrier 2 (.1) AT1G74240 125 / 6e-33 Mitochondrial substrate carrier family protein (.1) AT4G39460 123 / 2e-32 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G37890 111 / 4e-28 Mitochondrial substrate carrier family protein (.1) AT5G15640 110 / 6e-28 Mitochondrial substrate carrier family protein (.1) AT4G11440 113 / 2e-27 Mitochondrial substrate carrier family protein (.1) AT3G55640 103 / 3e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G282400 [exp] 456 / 2e-162 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1) Potri.009G077600 [exp] 452 / 1e-160 AT1G07030 425 / 4e-150 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 134 / 1e-36 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 126 / 7e-34 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.003G127600 [exp] 128 / 8e-33 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 119 / 4e-31 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 117 / 2e-30 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.012G066000 [exp] 117 / 3e-30 AT1G74240 446 / 6e-158 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 117 / 4e-30 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026395 [exp] 466 / 3e-166 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1) Lus10042258 [exp] 462 / 7e-165 AT2G30160 484 / 2e-173 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 126 / 2e-33 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 127 / 5e-33 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10005787 [exp] 122 / 4e-32 AT4G39460 494 / 2e-177 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10006812 [exp] 117 / 6e-30 AT4G39460 478 / 6e-171 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Lus10035134 [exp] 113 / 1e-28 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 109 / 4e-27 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 104 / 3e-25 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 104 / 5e-25 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.016G125200.1 pacid=42809368 polypeptide=Potri.016G125200.1.p locus=Potri.016G125200 ID=Potri.016G125200.1.v4.1 annot-version=v4.1 ATGGCTGCCACCACCACCACCGATGCCTCCCCGAAATACCGGGCCCCGACTGATTTCCACCCCGAGATGCCAGAACTCTCGGTTTCCGAAAATCCCCATG ACGGTCTCCACTTTTGGCAGTTCATGGTTGCCGGGTCTATAGCTGGTTCCATTGAGCACATGGCTATGTTCCCTGTTGACACTCTGAAAACCCGCATGCA AGCCATTGTCGGTTCCGGGTCATACCCGGTTCAGAATGTTAACGTCCGGCAGGCTTGTAAGTCAATTATGAAAAATGAAGGCGCTGCTGGGTTTTATAGA GGTATTGGTGCAATGGGACTTGGTGCAGGACCTGCTCATGCTGTTTACTTTTCAGTTTATGAGCTTTGCAAGCAGTATTTTTCTCGTGGGGATCCGAATA ACTCTGTTGCTCATGCGGTTTCGGGTGTTTGTGCTACGGTGGCGAGTGATGCTGTTTTTACTCCGATGGATGTGGTGAAGCAGAGGTTGCAGTTGAAGAG TAGTCCGTATAAAGGAGTAGTGGATTGTGTGAGGAGGGTTCTTGTTGAAGAAGGGATTGGTGCGTTTTATGCTTCGTATAAGACTACTGTGGTTATGAAT GCGCCTTTTACGGCGGTTCACTTTGCCACTTATGAGGCGGCGAAGAGGGGTTTGATTGAGGTTTCACCGGATATTGCAGATGATGAGAGGTTGGTTGTCC ATGCTACTGCTGGTGCTGCTGCTGGTGCTTTAGCTGCTATTGTTACTACCCCTCTCGACGTTGTTAAAACGCAATTGCAGTGTCAGGGGGTCTGTGGCTG TGATAGATTTTCTAGTAGCTCAATTGGAAATGTTATTAAGATTATCGTGAAGAAGGACGGATACCAGGGGCTTATGAGGGGATGGATACCCAGGATGCTC TTCCATGCTCCGGCTGCTGCAATTTGCTGGTCTACCTATGAAGCATCAAAAGACTTCTTCCATCGACTCAATGGCAACCCGGATAACTAA
AA sequence Show only first row Show all	>Potri.016G125200.1 pacid=42809368 polypeptide=Potri.016G125200.1.p locus=Potri.016G125200 ID=Potri.016G125200.1.v4.1 annot-version=v4.1 MAATTTTDASPKYRAPTDFHPEMPELSVSENPHDGLHFWQFMVAGSIAGSIEHMAMFPVDTLKTRMQAIVGSGSYPVQNVNVRQACKSIMKNEGAAGFYR GIGAMGLGAGPAHAVYFSVYELCKQYFSRGDPNNSVAHAVSGVCATVASDAVFTPMDVVKQRLQLKSSPYKGVVDCVRRVLVEEGIGAFYASYKTTVVMN APFTAVHFATYEAAKRGLIEVSPDIADDERLVVHATAGAAAGALAAIVTTPLDVVKTQLQCQGVCGCDRFSSSSIGNVIKIIVKKDGYQGLMRGWIPRML FHAPAAAICWSTYEASKDFFHRLNGNPDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07030			Mitochondrial substrate carrie...		Potri.016G125200 [exp]	0	1
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016400 [exp]	2.44	0.9596
AT1G79120			Ubiquitin carboxyl-terminal hy...		Potri.001G439100 [exp]	4.89	0.9256
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G017002 [exp]	5.74	0.9533
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.001G118400 [exp]	9.32	0.8912
AT4G03230			S-locus lectin protein kinase ...		Potri.019G119700 [exp]	10.95	0.9326
AT3G52740			unknown protein		Potri.009G163900 [exp]	11.83	0.9299
AT2G19130			S-locus lectin protein kinase ...		Potri.013G096400 [exp]	12.96	0.9161
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G151725 [exp]	15.19	0.9193
AT1G59960			NAD(P)-linked oxidoreductase s...		Potri.012G040050 [exp]	16.09	0.8891
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.004G185900 [exp]	16.58	0.8942

Compare expression of checked genes

Potri.016G125200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.