Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08890 293 / 6e-103 Protein of unknown function, DUF538 (.1.2) AT5G37070 289 / 1e-101 Protein of unknown function, DUF538 (.1) AT5G01610 277 / 7e-97 Protein of unknown function, DUF538 (.1) AT2G03350 166 / 7e-53 Protein of unknown function, DUF538 (.1) AT4G02360 58 / 6e-11 Protein of unknown function, DUF538 (.1) AT5G19590 48 / 3e-07 Protein of unknown function, DUF538 (.1) AT3G07470 45 / 3e-06 Protein of unknown function, DUF538 (.1) AT3G07460 42 / 3e-05 Protein of unknown function, DUF538 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104000 [exp] 331 / 3e-118 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.010G162400 [exp] 184 / 4e-60 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.008G092500 [exp] 174 / 5e-56 AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 62 / 5e-12 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 60 / 1e-11 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 55 / 6e-10 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 40 / 0.0003 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012232 [exp] 286 / 3e-100 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 285 / 5e-100 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 260 / 1e-89 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 209 / 2e-70 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10026639 [exp] 172 / 3e-55 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 172 / 3e-55 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 143 / 6e-44 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 136 / 3e-41 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 61 / 9e-12 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 46 / 1e-06 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.016G125300.1 pacid=42809122 polypeptide=Potri.016G125300.1.p locus=Potri.016G125300 ID=Potri.016G125300.1.v4.1 annot-version=v4.1 ATGGATGCGATATTGAACAAAGTTGGGTCTTATTGGGTCGGTCAGAAAGCTAGCAAGGAGTTCAATTCTGTCGGCGACGACATCAATTCATTATCGACAA GCATTGAAGGAGGAACCAAATGGTTGGTGAACAAGCTCAAAGGAAAAATGCAAAAGCCGTTACCAGATCTGCTTAAGGAGTATGACTTGCCAATTGGAAT CTTTCCTCGTGATGCCACCAACTATGAGTTCAATGAAGAGACACGGAAGCTTACTGTGTTTATTCCTTCGATCTGTGAAGTTGGCTACAAGGACTCATCT GTTGTGCGTTTTTCGACCACAGTAACTGCATTTTTGGAGCAAGGAAAACTAGCTGATATAGAGGGGATGAAGACTAAAGTGATGATCTGGGTTAAAGTGT CCTGTATTGTATCTGCTGGATCAAAGCTCAACTTCACAGCTGGGATGAAGAGAACCAGGGATAGAGGGGCTTATGAGGTTCTTCGAGATGGGGTGGGCGT AGATAAGTTCTGA
AA sequence Show only first row Show all	>Potri.016G125300.1 pacid=42809122 polypeptide=Potri.016G125300.1.p locus=Potri.016G125300 ID=Potri.016G125300.1.v4.1 annot-version=v4.1 MDAILNKVGSYWVGQKASKEFNSVGDDINSLSTSIEGGTKWLVNKLKGKMQKPLPDLLKEYDLPIGIFPRDATNYEFNEETRKLTVFIPSICEVGYKDSS VVRFSTTVTAFLEQGKLADIEGMKTKVMIWVKVSCIVSAGSKLNFTAGMKRTRDRGAYEVLRDGVGVDKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08890			Protein of unknown function, D...		Potri.016G125300 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	1.00	0.7979
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.003G133600 [exp]	2.44	0.7172
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Potri.014G137100 [exp]	3.16	0.7188
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	6.00	0.7020
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	10.24	0.6924
AT1G51200			A20/AN1-like zinc finger famil...		Potri.001G018600 [exp]	14.28	0.6791
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.008G125800 [exp]	16.15	0.5799
					Potri.013G126000 [exp]	16.73	0.6328
AT1G19360		RRA3	reduced residual arabinose 3, ...		Potri.014G042700 [exp]	17.97	0.6125
AT3G07580			unknown protein		Potri.014G172600 [exp]	19.44	0.6118

Compare expression of checked genes

Potri.016G125300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.