Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38320 541 / 0 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01620 408 / 2e-140 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G40320 387 / 2e-132 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT2G40150 383 / 5e-131 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT3G11030 374 / 7e-127 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT3G55990 371 / 3e-125 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT1G73140 345 / 2e-116 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01360 330 / 3e-110 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G40160 326 / 2e-108 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06700 265 / 8e-83 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125600 [exp] 408 / 2e-140 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.010G184000 [exp] 388 / 7e-133 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G073300 [exp] 384 / 3e-131 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G187600 [exp] 366 / 2e-123 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 361 / 2e-121 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 348 / 2e-117 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 341 / 2e-114 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.001G376700 [exp] 333 / 1e-111 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 327 / 2e-108 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022676 [exp] 613 / 0 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10014238 [exp] 568 / 0 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10009839 [exp] 381 / 8e-130 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 380 / 1e-129 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10028974 [exp] 367 / 5e-124 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 365 / 2e-123 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 358 / 1e-120 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10002858 [exp] 347 / 3e-118 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10012229 [exp] 347 / 3e-118 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10027813 [exp] 342 / 8e-115 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.016G125500.1 pacid=42810155 polypeptide=Potri.016G125500.1.p locus=Potri.016G125500 ID=Potri.016G125500.1.v4.1 annot-version=v4.1 ATGGCAACGACGAAGCAGCTGATGGTTCCAGCGACATGGGGGATCAGAAGCAGCTTCCATTCCCTTATTGCACTTCTTGTCGCGTTCCTAGTCATAGCTT CCATCTATGTAACCCAAAATAGTGGTGTGCTCGTAGAAGATAGGACTAAGAGTAAGAGCTCTGGTGATTTGCTGTCAAGGTGCAATTTGTTCTCAGGAAA ATGGGTTTTTGATAACAAATCTTACCCTCTGTACAAAGAGAAAGAATGCACCTTCATGTCTGATCAGTTGGCTTGTGAGAAGTTTGGGAGAAAGGACTTG AACTATCAGAACTGGAGGTGGCAACCACACCAGTGTGACCTTCCTAGGTTCAATGCCACAGTATTGCTAGAAAGGCTAAGGAACAGGAGGCTTATGTTTG TAGGGGACTCATTAAACAGAGGCCAATGGGTTTCAATGGTCTGTCTCGTGGACTCGGTGATTCCTCCAGGGCTCCAATCCATGCATCAGTACCGCAATGG TTCATTGCACATCTACAAAGCCACTGAATATAATGCAACAATTGAGTTCTATTGGTCTCCTTTACTGGTGGAATCAAATTCTGATGATCCGGTATACCAC CGAGTAGATGATCGGACTGTTAGAGTTCAAGGCATTGAAAAGCATGCGAGGCATTGGACTGATGCTGACATTCTTGTTTTTAATACCTATCTTTGGTGGA GAAGAGCCCAAATGACTGTCATGTGGGGATCATTTGAAAGGCCAGATGGAATTTACAAGAGAGTACAGATGCCAAGAGTTTATGAGATGGCTTTAAAGAC ATGGTCAGATTGGCTAGAGGTTCATGTAAACCGAACCAAAACACAAATGTTCTTCATCAGCATGTCACCAACTCATGAAAAGGCTTTAGAGTGGGGTGGC GATGAAGGGCAAAATTGTTACAGCGAGACAGAACCGATCTTCAAAGAAGGATACAGAGGAGAGGCCTCCTGCCCAGAAATCATGCGTGTGGTTGAGAAGA CTCTTGATGACTTGAAAACAAGAGGATTAAATGTACAAATGATTAACATTACACAGTTATCAGATTACAGAAAAGAAGGCCATCAATCGATATATAGAAA GCAATGGGAGCCATTAAAGGAAGAACAAATATCAAAACCCAGCAGCTATGCAGACTGTATACATTGGTGTCTCCCTGGAGTTCCAGATGTGTGGAATGAA CTTCTTTATGCTCACATTATTAATCTTTGA
AA sequence Show only first row Show all	>Potri.016G125500.1 pacid=42810155 polypeptide=Potri.016G125500.1.p locus=Potri.016G125500 ID=Potri.016G125500.1.v4.1 annot-version=v4.1 MATTKQLMVPATWGIRSSFHSLIALLVAFLVIASIYVTQNSGVLVEDRTKSKSSGDLLSRCNLFSGKWVFDNKSYPLYKEKECTFMSDQLACEKFGRKDL NYQNWRWQPHQCDLPRFNATVLLERLRNRRLMFVGDSLNRGQWVSMVCLVDSVIPPGLQSMHQYRNGSLHIYKATEYNATIEFYWSPLLVESNSDDPVYH RVDDRTVRVQGIEKHARHWTDADILVFNTYLWWRRAQMTVMWGSFERPDGIYKRVQMPRVYEMALKTWSDWLEVHVNRTKTQMFFISMSPTHEKALEWGG DEGQNCYSETEPIFKEGYRGEASCPEIMRVVEKTLDDLKTRGLNVQMINITQLSDYRKEGHQSIYRKQWEPLKEEQISKPSSYADCIHWCLPGVPDVWNE LLYAHIINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	0	1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	4.24	0.9386
AT1G80950			Phospholipid/glycerol acyltran...		Potri.014G042200 [exp]	5.56	0.8946
AT5G53340			Galactosyltransferase family p...		Potri.003G136000 [exp]	6.16	0.9281
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	6.24	0.9275	NAP4.2
AT2G43420			3-beta hydroxysteroid dehydrog...		Potri.007G131200 [exp]	6.32	0.9193
AT5G62500		ATEB1B	end binding protein 1B (.1)		Potri.015G062900 [exp]	9.16	0.9126	ATEB1.4
AT4G14500			Polyketide cyclase/dehydrase a...		Potri.010G076500 [exp]	9.79	0.9135
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	11.83	0.9177
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	13.41	0.9116
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	13.85	0.9066

Compare expression of checked genes

Potri.016G125500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.