Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01620 657 / 0 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 398 / 2e-136 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT1G73140 383 / 2e-130 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40320 367 / 5e-124 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 359 / 1e-120 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT5G01360 341 / 8e-114 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 341 / 4e-113 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 332 / 1e-110 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 303 / 3e-99 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G62390 254 / 1e-79 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G125500 [exp] 392 / 2e-134 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.010G184000 [exp] 370 / 3e-125 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.008G073300 [exp] 364 / 6e-123 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 362 / 2e-122 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 338 / 9e-113 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.010G187600 [exp] 332 / 2e-109 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 332 / 3e-109 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 325 / 9e-108 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 312 / 2e-102 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012229 [exp] 555 / 0 AT5G01620 509 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10002858 [exp] 549 / 0 AT5G01620 510 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Lus10022676 [exp] 409 / 1e-140 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10014238 [exp] 361 / 3e-122 AT2G38320 495 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10040953 [exp] 360 / 3e-121 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10009839 [exp] 360 / 8e-121 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10027813 [exp] 341 / 1e-113 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028141 [exp] 338 / 2e-112 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10042845 [exp] 336 / 9e-112 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 334 / 7e-111 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.016G125600.1 pacid=42809055 polypeptide=Potri.016G125600.1.p locus=Potri.016G125600 ID=Potri.016G125600.1.v4.1 annot-version=v4.1 ATGATGCAGAGATGGCATAGAAAAAAATCCCATTTTCCTTTAGTAGCATTTATTTTTCTTGGTATTATCGTTTGTTCAATTCTTTACAATGAAAGTAGCA TTCAGCAGGTCCACGAAGAAGACCCATCAAACCAAGGTCCTAACCATCAACAACATGCCACCACAGTAACTTACGTTAAGCCAAATCTTGGTACCCACTC AAATTTTGCACCAGTGCTTTTGGATAGGTTTAGTAGATGTAACTCAACTAGTGAGTACAGTGGCAAGAGGATCAGATGGGGTGACTCGAAAGTGGAAAGG GGGAGGAGAAAGAGCTTGGAAAGTTGTGATGTTTTTGCAGGCAAATGGGTGTTTGATAGTGAGTCATATCCGCTTTACAATGAGTCTGATTGTCCTTACA TGTCTGATCAATTGGCGTGTCATAAGCATGGAAGGTCTGATTTGGGGTATCAGCATTGGAGGTGGCAACCTCATGATTGCAACTTGAAGAGATGGAATGT GACTGAAATGTGGGAGAAGTTGAGAGGGAAGAGGCTAATGTTTGTGGGGGATTCGCTAAATAGAGGGCAGTGGATATCAATGGTGTGTTTGTTACAGTCA GTAATTCCAGCAGATAAGAGATCCATGTCACCAAATGCCCCTCTTACCATTTTCAGGGCAGAGGAATACAATGCCACTATCGAATTTCTCTGGGCCCCTC TTCTTGTTGATTCTAATTCTGATGACCCAGTGAATCACAGATTGGATGAACGGATAATGCGCCCAGATTCAGTTCTAAAGCATTCATCAAAGTGGGAGCA TGCAGACATACTAGTTTTCAACTCGTACTTGTGGTGGAGACAAGGCCCTGTTAAGCTTTTATGGAGTGCTGAAGAGAATGGAGCTTGTGAAGAATTAGAC GGGTTAGGAGCTATGGAGTTGGCTATGGGGGCCTGGGCTGACTGGGTGGCTTCTAAAGTTGATCCCCAGAAGAAACGAGTCTTCTTTGTTACCATGTCTC CAACACATCTCTGGAGCCGTGAATGGGAGCCTGGAAGTAATGGAAATTGCTATAGTGAGAAGATGCCAATTGATTGGGAGGGGTACTGGGGAAGTGGTTC TGATATGCCTACAATGCGCATGGTGGAAAAGGTTCTTGGCAGATTGGGATCAAAGGTTTCAGTTCTCAATATTACACAGCTTTCAGAGTATCGTAAAGAT GGCCACCCTTCAATCTATAGAAAATTCTGGGAGACATTGAGCCCTGAACAATTATCGAACCCAAAATCTTACTCTGATTGTATACATTGGTGCTTGCCTG GTGTGCCTGATGTCTGGAACGAATTACTATTCCATTTGTTGTAA
AA sequence Show only first row Show all	>Potri.016G125600.1 pacid=42809055 polypeptide=Potri.016G125600.1.p locus=Potri.016G125600 ID=Potri.016G125600.1.v4.1 annot-version=v4.1 MMQRWHRKKSHFPLVAFIFLGIIVCSILYNESSIQQVHEEDPSNQGPNHQQHATTVTYVKPNLGTHSNFAPVLLDRFSRCNSTSEYSGKRIRWGDSKVER GRRKSLESCDVFAGKWVFDSESYPLYNESDCPYMSDQLACHKHGRSDLGYQHWRWQPHDCNLKRWNVTEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQS VIPADKRSMSPNAPLTIFRAEEYNATIEFLWAPLLVDSNSDDPVNHRLDERIMRPDSVLKHSSKWEHADILVFNSYLWWRQGPVKLLWSAEENGACEELD GLGAMELAMGAWADWVASKVDPQKKRVFFVTMSPTHLWSREWEPGSNGNCYSEKMPIDWEGYWGSGSDMPTMRMVEKVLGRLGSKVSVLNITQLSEYRKD GHPSIYRKFWETLSPEQLSNPKSYSDCIHWCLPGVPDVWNELLFHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01620		TBL35	TRICHOME BIREFRINGENCE-LIKE 35...		Potri.016G125600 [exp]	0	1
AT5G59350			unknown protein		Potri.009G029300 [exp]	3.46	0.7481
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Potri.009G037400 [exp]	30.06	0.6933	Pt-SMO2.2
AT1G63850			BTB/POZ domain-containing prot...		Potri.003G131000 [exp]	35.49	0.6316
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	39.45	0.6920
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.001G415600 [exp]	39.97	0.6493
AT4G24710			P-loop containing nucleoside t...		Potri.012G086400 [exp]	42.42	0.6873
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	44.59	0.6860	FAH1.2
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.015G031400 [exp]	46.43	0.6653
AT1G22270			Trm112p-like protein (.1)		Potri.005G165000 [exp]	55.42	0.6824
AT4G17660			Protein kinase superfamily pro...		Potri.002G251300 [exp]	63.85	0.6150

Compare expression of checked genes

Potri.016G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.