Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19350 81 / 1e-18 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 77 / 2e-17 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT4G36780 75 / 2e-16 BZR BEH2 BES1/BZR1 homolog 2 (.1) AT1G75080 75 / 3e-16 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT4G18890 73 / 7e-16 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT1G78700 70 / 1e-14 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT5G45300 59 / 8e-11 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 56 / 2e-09 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G126400 [exp] 77 / 3e-17 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.014G041600 [exp] 76 / 6e-17 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 76 / 7e-17 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.011G106800 [exp] 69 / 2e-14 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.004G062400 [exp] 69 / 3e-14 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.007G030700 [exp] 68 / 6e-14 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.003G026600 [exp] 68 / 6e-14 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 68 / 6e-14 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 67 / 2e-13 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026036 [exp] 77 / 2e-17 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014327 [exp] 77 / 5e-17 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10010795 [exp] 77 / 5e-17 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10016307 [exp] 77 / 6e-17 AT1G75080 392 / 5e-137 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10007319 [exp] 71 / 1e-14 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10005419 [exp] 70 / 2e-14 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10015238 [exp] 70 / 2e-14 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10029270 [exp] 68 / 7e-14 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10035679 [exp] 63 / 7e-12 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Lus10018842 [exp] 56 / 2e-09 AT2G45880 879 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [poplar] [flax] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.016G125700.1 pacid=42809039 polypeptide=Potri.016G125700.1.p locus=Potri.016G125700 ID=Potri.016G125700.1.v4.1 annot-version=v4.1 ATGGTAGATGAAAAGAAGGTGGTGTTAAGTGGCTGCATCAAGACTAGCAGGGGGCCTTGGAGAGTACATAGAGCTACAAAAGATGGCCGCATTGTCACCA AATTTCGCTATCCTTCTGATAGGGAACGGCAAACGAACCAGCAGAGGGAGCGTCGAAGACGAGCAGTGGCTAAGAAAATTTTTGAAGGTCTTCGAAAGCA TGGAAACTACAAGCTTCCGAAACATGCAGACAGCAATGACCTGCTCAAGGCTCTCTGTGAGGAAGCAGGATGGCTCGTTGAGGAGGATGGCACCATTTGT AGGATGGTTCTTCATAACCCTTATCATGAAGCTAATGTTGCAAGCTCCTATGATGCCTCGCCAGAAGATCACAATTACTGCACCTGCAACAATCATTTGG ATTCAGAATATGGAGCATTTCCACTGAGCACCAGCTCACCAATTCAAGAGTGCCATGGAGGAAATGATGTCAACCTCATCCTTTCACTCTAG
AA sequence Show only first row Show all	>Potri.016G125700.1 pacid=42809039 polypeptide=Potri.016G125700.1.p locus=Potri.016G125700 ID=Potri.016G125700.1.v4.1 annot-version=v4.1 MVDEKKVVLSGCIKTSRGPWRVHRATKDGRIVTKFRYPSDRERQTNQQRERRRRAVAKKIFEGLRKHGNYKLPKHADSNDLLKALCEEAGWLVEEDGTIC RMVLHNPYHEANVASSYDASPEDHNYCTCNNHLDSEYGAFPLSTSSPIQECHGGNDVNLILSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19350	BZR	BZR2, BES1	BRASSINAZOLE-RESISTANT 2, BRI1...		Potri.016G125700 [exp]	0	1
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Potri.014G184701 [exp]	2.00	0.8521
AT5G15880			unknown protein		Potri.004G105400 [exp]	2.44	0.8511
AT3G11470			4'-phosphopantetheinyl transfe...		Potri.010G238500 [exp]	2.82	0.8606
AT2G20495			unknown protein		Potri.005G225900 [exp]	4.58	0.7847
AT1G75060			unknown protein		Potri.003G130100 [exp]	6.85	0.7600
AT5G16650			Chaperone DnaJ-domain superfam...		Potri.013G078200 [exp]	7.93	0.8104
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	8.36	0.8102
					Potri.010G031250 [exp]	8.83	0.8228
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G145510 [exp]	10.48	0.7839
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Potri.002G061100 [exp]	12.08	0.7023

Compare expression of checked genes

Potri.016G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.