Plant FIBer expression Database

Potri.016G125901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G189600
[exp]
93 / 2e-23 AT5G01630 1131 / 0.0 BRCA2-like B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002857
[exp]
38 / 0.0004 AT4G00020 851 / 0.0 MATERNAL EFFECT EMBRYO ARREST 43, EMBRYO SAC DEVELOPMENT ARREST 20, BREAST CANCER 2 like 2A (.1.2)
PFAM info
Representative CDS sequence
>Potri.016G125901.1 pacid=42810414 polypeptide=Potri.016G125901.1.p locus=Potri.016G125901 ID=Potri.016G125901.1.v4.1 annot-version=v4.1
ATGATGGAAATGCACCGATTTTCCATACAGGATCAGGATTTATCACATTCAGGGATGATAGCCGGTGTGAGAAATAATGGGGTTATTGGTGATGATCTGC
TAGTTCCCAGGTCTCTTTTAGTTTCCAAGTCTGGTATATTAAAAAGCCAATTGGTAAAGGAGGTCGATACAGACTTGTTGCAACCTGAAGCACAATATTC
TGCTCCCAAACCACCACCATTTAAATTCCACACTACTGGTGCTGGTGGAAGATCCTTTTCCGTGCAAGGAGTCTTCTTGGTGACCCAGACATAG
AA sequence
>Potri.016G125901.1 pacid=42810414 polypeptide=Potri.016G125901.1.p locus=Potri.016G125901 ID=Potri.016G125901.1.v4.1 annot-version=v4.1
MMEMHRFSIQDQDLSHSGMIAGVRNNGVIGDDLLVPRSLLVSKSGILKSQLVKEVDTDLLQPEAQYSAPKPPPFKFHTTGAGGRSFSVQGVFLVTQT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.016G125901
[exp]
0 1
AT3G10440 Shugoshin C terminus (.1) Potri.008G032600
[exp]
12.68 0.7794
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Potri.010G122932
[exp]
13.56 0.8116
AT1G26090 P-loop containing nucleoside t... Potri.010G130700
[exp]
13.74 0.7583
AT2G19260 RING/FYVE/PHD zinc finger supe... Potri.006G075400
[exp]
22.18 0.7916
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.007G102500
[exp]
24.24 0.7509
AT4G02425 unknown protein Potri.002G204700
[exp]
27.42 0.7163
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
29.15 0.7722
AT5G51290 Diacylglycerol kinase family p... Potri.004G233300
[exp]
32.93 0.7822
AT1G45150 unknown protein Potri.014G180700
[exp]
40.54 0.7664
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Potri.008G178951
[exp]
45.21 0.7640

Potri.016G125901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.