Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38330 499 / 1e-172 MATE efflux family protein (.1) AT4G38380 352 / 9e-115 MATE efflux family protein (.1) AT1G51340 319 / 1e-102 MATE efflux family protein (.1.2) AT3G08040 300 / 3e-95 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 48 / 1e-05 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183600 [exp] 377 / 5e-124 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 372 / 6e-122 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 367 / 1e-120 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G053600 [exp] 319 / 2e-102 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 303 / 2e-96 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 276 / 1e-85 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 276 / 2e-85 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012227 [exp] 545 / 0 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 414 / 8e-140 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10023943 [exp] 347 / 1e-112 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 297 / 2e-93 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10026303 [exp] 293 / 2e-92 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 286 / 5e-90 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 282 / 9e-87 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10014440 [exp] 278 / 3e-86 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 281 / 6e-84 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10039609 [exp] 254 / 3e-77 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.016G126000.4 pacid=42809521 polypeptide=Potri.016G126000.4.p locus=Potri.016G126000 ID=Potri.016G126000.4.v4.1 annot-version=v4.1 ATGGCCACAGTAGCTCTCTCACTCAAGCTTCTAAGCATACACAATTTCCACACAAATCCTTCCTTTATTTCTCAAAAAAGAAACGAAAATTTATCCGCTC CTTTAAAAACCACCGTCCCTAGATCATCACCTCCTCAAAACAACAGCGCAACCACCAACACCAACACCACCACCACGAAGACGACGAAAACGACGTCGCT TGATAACAATACCCCTAACGAACCGAAACTAAAACCGACTTCCGTTGACAGCAAACCTTCTTCAACTTCCACGTCATCTCTAACCGATTCGGTTGCTATT CTGTTTACTCGTCTCAGAGATGGAGTTAAAATTGACGAGGTTGGAGTGGAGATTTTATCAATTGCATTGCCGGCTGCTTTGGCCCTTGCTGCTGATCCTA TTGCCTCACTTGTTGATACTGCTTATGTTGGTCATATCGGATCGGTTGAATTGGCAGCGGTTGGAGTGTCAATTTCGATATTTAATTTGGTTTCCAAGTT GTTTAATGTTCCTTTGCTTAATATTACTACTTCCTTTGTCGCCGAAGAGCAAGCATTGATTAGCAAAAGTAACGATGATTCGGTGAAGGATCAGGAAGGG AAGCGAGTTCTTCCTTCAGTTTCGACTTCTTTAGCGCTTGCTGCTGCTGTTGGTGTTGCAGAAACGGTGGCTCTCTCAGTTGGCTCGGGATTCTTGATGA ATATCATGGGTATACCTGTTGATTCACCAATGCGAGTGCCAGCTGAGCAGTTTCTTACCTTGAGGGCCTTTGGTGCTCCACCCATTGTAATTGCACTTGC AGCACAAGGCACATTTCGAGGATTTATGGATACAAAGACACCCTTATATGCCATTGGTGCCGGCAACTTACTGAATGCAATATTGGATGCAATATTCATT GTTGTATTTGGTTTCGGTGTTGGTGGTGCTGCAGTTGCTACAGTGATTTCTGAATATCTCATCGCTTTCATCCTTCTCTGGGAGTTGAATGACAAGGTGC AGCTAATCTCTCCAAACATTGATGCAAGGGAAGTTGTCCGCTATCTGAATTCTGGTGGTCTTCTTATTGGCAGGACCATTGCAGTGCTGTTAACAATGAC ATTAGCAACATCCATGGCAGCTAGGGAAGGCCCCATACAAATGGCAGGTCATCAAATTTGCATGCAAGTCTGGTTAGCTGTATCTTTGCTTAATGATGCT TTAGCCATCGCTGGCCAGGCTCTTCTGGCCAGTGGTTACTCCCAAGGGAATTATGAACAAGCACGACTAGTGATTTATAGAGTTCTGCAGATTGGTTTGG TAACTGGAATTGCTTTGGGTGTGATATTATCCCTTGGGTTTGGAGCTTTTTCCAGTTTGTTTAGTACAGATCCAGAAGTTCTGGGAGTTGTCTGGTCTGG CATTTGGTTTGTTGCTGGGTCTCAGCCGATGAATGCTCTTGCATTTGTTCTTGATGGGCTATATTATGGGGTTTCAGACTTTGGCTTTGCTGCCTACTCT ATGGTGCTGGTTTCTCTGATTTCTTCTGTCTTCGTACTTGTGGCTGCTCCTGTATTTGGTCTCACTGGAGTCTGGGCAGGTTTATTTCTCTTCATGACCT TGCGTGTAGTGGCTGGAGTTTGGAGGCTGGGCACAAAAAGGGGACCGTGGGAAATGGTCTGGGTGAATTCGCAACAGGAAAGCGAGTGA
AA sequence Show only first row Show all	>Potri.016G126000.4 pacid=42809521 polypeptide=Potri.016G126000.4.p locus=Potri.016G126000 ID=Potri.016G126000.4.v4.1 annot-version=v4.1 MATVALSLKLLSIHNFHTNPSFISQKRNENLSAPLKTTVPRSSPPQNNSATTNTNTTTTKTTKTTSLDNNTPNEPKLKPTSVDSKPSSTSTSSLTDSVAI LFTRLRDGVKIDEVGVEILSIALPAALALAADPIASLVDTAYVGHIGSVELAAVGVSISIFNLVSKLFNVPLLNITTSFVAEEQALISKSNDDSVKDQEG KRVLPSVSTSLALAAAVGVAETVALSVGSGFLMNIMGIPVDSPMRVPAEQFLTLRAFGAPPIVIALAAQGTFRGFMDTKTPLYAIGAGNLLNAILDAIFI VVFGFGVGGAAVATVISEYLIAFILLWELNDKVQLISPNIDAREVVRYLNSGGLLIGRTIAVLLTMTLATSMAAREGPIQMAGHQICMQVWLAVSLLNDA LAIAGQALLASGYSQGNYEQARLVIYRVLQIGLVTGIALGVILSLGFGAFSSLFSTDPEVLGVVWSGIWFVAGSQPMNALAFVLDGLYYGVSDFGFAAYS MVLVSLISSVFVLVAAPVFGLTGVWAGLFLFMTLRVVAGVWRLGTKRGPWEMVWVNSQQESE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38330			MATE efflux family protein (.1...		Potri.016G126000 [exp]	0	1
AT5G13730		SIGD, SIG4	sigma factor 4 (.1)		Potri.009G057200 [exp]	1.41	0.9572
AT5G53350		CLPX	CLP protease regulatory subuni...		Potri.012G015600 [exp]	2.82	0.9358
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	4.24	0.9472
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	4.47	0.9500
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.011G119500 [exp]	6.00	0.9394	SPA3.2
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	6.32	0.9445
AT4G14605			Mitochondrial transcription te...		Potri.017G067600 [exp]	8.36	0.9346
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	9.21	0.9414
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.009G041800 [exp]	9.48	0.9352
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	10.58	0.9379

Compare expression of checked genes

Potri.016G126000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.