Plant FIBer expression Database

Potri.016G126200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08780 262 / 1e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014237
[exp]
331 / 1e-113 AT3G08780 311 / 2e-105 unknown protein
Lus10022677
[exp]
327 / 5e-112 AT3G08780 313 / 2e-106 unknown protein
PFAM info
Representative CDS sequence
>Potri.016G126200.1 pacid=42810236 polypeptide=Potri.016G126200.1.p locus=Potri.016G126200 ID=Potri.016G126200.1.v4.1 annot-version=v4.1
ATGGACGATCTTCCATTCCAAAAGATCACAATATCAGGCCCCACATTATCCGCCTTGATGCACCGCATCACCACTTCCCTCGGCGACGTGGACGGTCTCT
TATTCGGCCACGTAACCCATCTCACCCCTTCTACCCTCACCGACGACAACACTCCCCAAAACCCCGATTCTAACGTAATCGCTACGATTACCTCCTTCTT
CTGCCCTAATATCCCTCTCTCCTTCTACGACTCGCTCGGCCGAGTCGACTCAGTGACTCTCCACCGACTCGTCTCCCCAACAACTCATCAAAGCAATAGT
AGCAGTAGCACCAGTAATTTTCTCGGCTGGTTTTCCGCGAGAAGGAAGTCCCCAATCCGCCCTTCGATGAGGGAATTCTGCGTTTCGCAATCTTTGAGCC
GCCTTAAGACGGCGGCGAAGGGTGAGAAGGATTTGAATCCGTGCGTATTTTTGTTATTTACCACGCCAGTACAAGGCGAGTTGTTGTACCATACGCATGA
GTATCGCGCGTATCAGTTTCGGGTTAATTCAAGGTGTTTTGACCCGAAATCGATTGGGATTGATAACATTGGGCCGGATTTTCGAGGAAACTACGGGTGT
TTTAGCCCTAATTCGCCGTTTCCGGAGTTGAAGTGTGCATCGGCGATGAATGATGAGGTGGGGGAGGGTTTGAATAGGATGGATAGGGTTTTAAATGATC
AAAAGGAGTTGGATATGGTTGCAGAAGGGTTTTGTGTTAAGGATTTAGGGAAGTTGATGGGATCGGAGACGCTGAATTCTACAATGAGTTTGGAGGATTT
GTATGAGAAAATGTTGGGTAAGCTTGACAATTTGGCTAGGCAAGTTGAGAAGAGTAATGCTAAGGTGTTGGAGATGGAAAATCATAATAGGAAACTGAGG
TACAAAATTGCCAGGCCTGTACCAGAATAA
AA sequence
>Potri.016G126200.1 pacid=42810236 polypeptide=Potri.016G126200.1.p locus=Potri.016G126200 ID=Potri.016G126200.1.v4.1 annot-version=v4.1
MDDLPFQKITISGPTLSALMHRITTSLGDVDGLLFGHVTHLTPSTLTDDNTPQNPDSNVIATITSFFCPNIPLSFYDSLGRVDSVTLHRLVSPTTHQSNS
SSSTSNFLGWFSARRKSPIRPSMREFCVSQSLSRLKTAAKGEKDLNPCVFLLFTTPVQGELLYHTHEYRAYQFRVNSRCFDPKSIGIDNIGPDFRGNYGC
FSPNSPFPELKCASAMNDEVGEGLNRMDRVLNDQKELDMVAEGFCVKDLGKLMGSETLNSTMSLEDLYEKMLGKLDNLARQVEKSNAKVLEMENHNRKLR
YKIARPVPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08780 unknown protein Potri.016G126200
[exp]
0 1
AT4G36870 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodom... Potri.005G129500
[exp]
2.44 0.7240
AT5G63910 FCLY farnesylcysteine lyase (.1) Potri.007G101600
[exp]
5.65 0.7150
AT2G44520 COX10 cytochrome c oxidase 10 (.1) Potri.002G216100
[exp]
6.63 0.7025
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107550
[exp]
10.90 0.6571
AT2G17030 F-box family protein with a do... Potri.004G179685
[exp]
16.52 0.6694
AT3G61170 Tetratricopeptide repeat (TPR)... Potri.002G155100
[exp]
19.18 0.6500
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Potri.009G107600
[exp]
19.28 0.6870 2OGox7
AT5G46170 F-box family protein (.1) Potri.011G082900
[exp]
22.24 0.6817
AT1G31940 unknown protein Potri.001G135000
[exp]
22.97 0.6836
AT1G27752 Ubiquitin system component Cue... Potri.014G016900
[exp]
23.23 0.6747

Potri.016G126200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.