Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RHG1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 1038 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 587 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT2G26730 334 / 1e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 337 / 3e-100 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G08680 324 / 5e-100 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63930 330 / 2e-98 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 317 / 3e-97 Leucine-rich repeat protein kinase family protein (.1.2) AT5G07180 320 / 2e-95 ERL2 ERECTA-like 2 (.1) AT1G12460 317 / 6e-95 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 317 / 9e-95 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G104300 [exp] 1350 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.010G183400 [exp] 1065 / 0 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G137000 [exp] 348 / 6e-106 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 340 / 8e-106 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 333 / 1e-103 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 333 / 2e-103 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G074000 [exp] 343 / 6e-103 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 342 / 9e-103 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 338 / 2e-102 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022679 [exp] 934 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 930 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 919 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 888 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 701 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10025223 [exp] 347 / 1e-105 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017756 [exp] 337 / 6e-105 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 344 / 9e-105 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022738 [exp] 338 / 2e-102 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10030526 [exp] 330 / 2e-99 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G126300.1 pacid=42809081 polypeptide=Potri.016G126300.1.p locus=Potri.016G126300 ID=Potri.016G126300.1.v4.1 annot-version=v4.1 ATGGAAAATACTTGTCATTCCCGCGACAAGTGCTTTCTGTGTGCACACTTATGCTTGTTTCTACTAGTTTTTTTGCCCCAGTTTGCTTCGAGCCAAAAAG GGGACGGCGTAGCTGTCACCCAATCAGATTATCGATCTCTTCGAGCTATAAAGAATGAACTGATTGACTTCAAAGGGTTTTTACGCAGCTGGAATGATAG TGGATATGGAGCTTGCTCTGGTAGGTGGGTAGGAATCAAATGTGTCAAAGGACAGGTTATTGCTATCCAGCTTCCTTGGAAGGGACTAGGTGGCAGAATC TCCGAGAAGATTGGTCAGCTTCAAGCACTCAGAAAGATTAGTTTACATGACAATGTTCTTGGTGGTACTGTCCCTTCTTCTCTTGGTTTTCTTCGCAATC TTAGAGGAGTTTACCTCTTCAACAACCGGCTTTCAGGTTCTATTCCTCCCTCACTTGGTAACTGTCCTGTTCTTCAGAGTCTTGATGTAAGTAACAATTC ACTCATTGGTACAATTCCTCCAAGTCTTACAAATTCTACTAAGTTATATAGACTTAATTTGAGCTTTAATTCGTTAATGGGGTCGATCCCAGTTGGTCTT ACTCAATCCCCTTCTCTCATATTCCTTGCTATCCAACACAACAACCTCACTGGGCCAATCCCAGATTCTTGGGGGAGTAAAGGGAACTATTCTTCTCTCC TTCAGTTCTTGACCCTTGATCATAATCGCATTTCTGGAACTATTCCTGTTAGTCTTAGCAAGTTGGCTTTACTTCAAGAGATTTCTCTTAGTCACAATCA GCTTTCTGGGGCCATACCTTATGAAATGGGGAGTCTCTCAAGGCTCCAAAAGCTAGATATTTCAAACAATGCTTTCAGTGGAAGCATTCCATTTAGCTTC TCCAATTTAACCTCGTTATTCTCTATGAATCTTGAGGGAAACCGTCTAGACAATCAGATCCCAGAAGGTTTTGATAGATTGCATAACCTCTCAATGCTAA ACCTGAAAAACAATCGGTTCAAAGGCCCTATCCCAGCTTCTATTGGAAACATTTCTAGCATCAACCAGCTTGATTTAGCCCAAAATAATTTTAGTGGAGA AATTCCAGCTTCTCTTGCTCGCCTAGCCAATCTCACTTATTTCAATGTTTCTTACAACAACCTTTCTGGTTCTGTTCCCTCTTCTATTGCTAAAAAGTTC AATTCAAGCTCCTTTGTGGGAAACCTTCAGCTATGTGGCTATAGCATTTCAACCCCATGTCCTTCACCCCCTCCAGAAATTCTTCCAGCTCCAACAAAAG GATCACCGAAACATCATCACCGAAAACTTAGCACCAAAGACATCATCCTCATAGCGGCTGGTATCCTCTTAGTTGTGCTGCTGCTTCTCTGTTCCATTCT GCTCTGTTGTTTGATGAAGAAAAGGTCTGCTTCTAAAGAAAAGAGTGGCAAAACTACTACGCGGGGGCTCCCAGGGAAAGGTGAGAAAACAGGCGCTGTG GCAGGTCCTGAAGTTGAATCTGGAGGTGAAATGGGTGGGAAGTTAGTCCACTTTGATGGCCCATTTTTGTTTACAGCAGATGACTTGTTGTGTGCAACTG CGGAGATAATGGGGAAGAGCACTTACGGAACAGCATACAAGGCAACATTAGAGGATGGAAATCAAGTTGCGGTGAAAAGGTTGAGGGAGAAGACTACAAA GGGGCAGAGGGAGTTTGAGACTGAGGCTGCTGCTCTTGGAAAGATTAGGCACCCAAATCTCTTAGCACTAAGGGCTTATTATTTAGGTCCCAAAGGAGAG AAGCTTCTTGTTTTTGACTACATGCATAAAGGGAGCCTTGCATCCTACCTCCATGCTCGTGGGCCTGAAACCACTGTCAATTGGCCAACAAGGATGAACA TAGCCATTGGCGTTGCGCGTGGACTAAATCACCTCCACAGCCAAGAGAACATCATTCATGGGAATCTCACATCAAGCAACGTATTACTGGACGAGCAAAC TAATGCACACATTGCAGACTTTGGCCTCTCCAGGCTCATGACTGCTGCTGCCAACACGAATGTGATTGCCACTGCTGGAACACTCGGCTATCGAGCACCA GAGCTCTCAAAACTCAAGAACGCCAGCACGAAGACTGATGTGTACAGCCTCGGGGTGATCATTTTAGAGCTTTTGACTGGGAAATCACCAGGTGAACCAA TGAATGGCATGGATTTGCCACAATGGGTTGCATCAATAGTGAAGGAAGAGTGGACTAATGAAGTCTTTGATTTAGAGATTATGAGGGATGCACAAACTAT AGGTGATGATGAGTTGCTTAACACTTTGAAATTAGCTCTGCATTGTGTTGATCCCACACCAGCAGCTCGTCCTGAAGCCGAACAAGTTGTTCAGCAACTT GAGGAGATTAAGCCAGAGCTAGCTGCTGCTGCTGCTGCTGCTGCTGCTGATGAAGGAGCCGAAGTCCCACCAACAACTGAATAA
AA sequence Show only first row Show all	>Potri.016G126300.1 pacid=42809081 polypeptide=Potri.016G126300.1.p locus=Potri.016G126300 ID=Potri.016G126300.1.v4.1 annot-version=v4.1 MENTCHSRDKCFLCAHLCLFLLVFLPQFASSQKGDGVAVTQSDYRSLRAIKNELIDFKGFLRSWNDSGYGACSGRWVGIKCVKGQVIAIQLPWKGLGGRI SEKIGQLQALRKISLHDNVLGGTVPSSLGFLRNLRGVYLFNNRLSGSIPPSLGNCPVLQSLDVSNNSLIGTIPPSLTNSTKLYRLNLSFNSLMGSIPVGL TQSPSLIFLAIQHNNLTGPIPDSWGSKGNYSSLLQFLTLDHNRISGTIPVSLSKLALLQEISLSHNQLSGAIPYEMGSLSRLQKLDISNNAFSGSIPFSF SNLTSLFSMNLEGNRLDNQIPEGFDRLHNLSMLNLKNNRFKGPIPASIGNISSINQLDLAQNNFSGEIPASLARLANLTYFNVSYNNLSGSVPSSIAKKF NSSSFVGNLQLCGYSISTPCPSPPPEILPAPTKGSPKHHHRKLSTKDIILIAAGILLVVLLLLCSILLCCLMKKRSASKEKSGKTTTRGLPGKGEKTGAV AGPEVESGGEMGGKLVHFDGPFLFTADDLLCATAEIMGKSTYGTAYKATLEDGNQVAVKRLREKTTKGQREFETEAAALGKIRHPNLLALRAYYLGPKGE KLLVFDYMHKGSLASYLHARGPETTVNWPTRMNIAIGVARGLNHLHSQENIIHGNLTSSNVLLDEQTNAHIADFGLSRLMTAAANTNVIATAGTLGYRAP ELSKLKNASTKTDVYSLGVIILELLTGKSPGEPMNGMDLPQWVASIVKEEWTNEVFDLEIMRDAQTIGDDELLNTLKLALHCVDPTPAARPEAEQVVQQL EEIKPELAAAAAAAAADEGAEVPPTTE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.016G126300 [exp]	0	1	Pt-RHG1.4
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066500 [exp]	2.00	0.8758
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Potri.001G278300 [exp]	3.87	0.8623
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	4.47	0.8552
AT1G14900		HMGA	high mobility group A (.1)		Potri.010G109600 [exp]	5.91	0.8441
AT5G65360			Histone superfamily protein (....		Potri.003G210100 [exp]	6.32	0.8541	HTR902
AT5G60920		COB	COBRA-like extracellular glyco...		Potri.015G060000 [exp]	8.06	0.8196
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	9.94	0.8304
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	10.00	0.8305
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Potri.005G190500 [exp]	10.24	0.7911
AT2G43990			unknown protein		Potri.007G145400 [exp]	10.95	0.8289

Compare expression of checked genes

Potri.016G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.