Plant FIBer expression Database

Potri.016G126600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01650 217 / 2e-74 Tautomerase/MIF superfamily protein (.1.2)
AT5G57170 128 / 1e-39 Tautomerase/MIF superfamily protein (.1.2)
AT3G51660 110 / 2e-32 Tautomerase/MIF superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G104500
[exp]
197 / 7e-67 AT5G01650 200 / 5e-68 Tautomerase/MIF superfamily protein (.1.2)
Potri.016G126500
[exp]
192 / 4e-65 AT5G01650 193 / 2e-65 Tautomerase/MIF superfamily protein (.1.2)
Potri.016G126800
[exp]
165 / 3e-54 AT5G01650 185 / 4e-62 Tautomerase/MIF superfamily protein (.1.2)
Potri.006G104600
[exp]
158 / 3e-51 AT5G01650 180 / 3e-60 Tautomerase/MIF superfamily protein (.1.2)
Potri.016G126700
[exp]
142 / 3e-45 AT5G01650 164 / 6e-54 Tautomerase/MIF superfamily protein (.1.2)
Potri.006G075100
[exp]
130 / 4e-40 AT5G57170 194 / 7e-66 Tautomerase/MIF superfamily protein (.1.2)
Potri.006G104800
[exp]
127 / 5e-39 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1)
Potri.016G127300
[exp]
126 / 8e-39 AT3G51660 151 / 7e-49 Tautomerase/MIF superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022681
[exp]
166 / 4e-54 AT5G01650 172 / 8e-57 Tautomerase/MIF superfamily protein (.1.2)
Lus10014233
[exp]
159 / 9e-52 AT5G01650 169 / 1e-55 Tautomerase/MIF superfamily protein (.1.2)
Lus10012223
[exp]
131 / 8e-41 AT5G01650 146 / 9e-47 Tautomerase/MIF superfamily protein (.1.2)
Lus10012222
[exp]
124 / 5e-38 AT3G51660 158 / 1e-51 Tautomerase/MIF superfamily protein (.1)
Lus10033324
[exp]
97 / 1e-26 AT5G57170 119 / 1e-35 Tautomerase/MIF superfamily protein (.1.2)
Lus10034783
[exp]
92 / 1e-24 AT5G57170 116 / 4e-34 Tautomerase/MIF superfamily protein (.1.2)
Lus10000344
[exp]
81 / 3e-21 AT3G51660 96 / 2e-27 Tautomerase/MIF superfamily protein (.1)
Lus10000345
[exp]
53 / 2e-09 AT5G01650 52 / 2e-11 Tautomerase/MIF superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0082 MIF PF01187 MIF Macrophage migration inhibitory factor (MIF)
Representative CDS sequence
>Potri.016G126600.3 pacid=42810406 polypeptide=Potri.016G126600.3.p locus=Potri.016G126600 ID=Potri.016G126600.3.v4.1 annot-version=v4.1
ATGCCTTGCTTGAACATTTCGACGAACGTTAATCTTGATGGCGTCAACACATCTGCCATTCTCTCTGAAGCCTCCTCTCAAGTAGCCAAAATCATCAAAA
AACCCGAGTCTTATGTGATGATTGTGTTGAAGGGCTCAGTTCCAATTTCATTTGGAGGAACCGAGCAGCCAGCAGCTTATGGTGAACTGGTATCTGTTGG
TGGCCTTAACAGTGATGTGAACAACAAACTGAGTTCTGCAATTGCAACAATTCTTGAGTCAAAGCTGTCGGTGCCCAAGTCACGGTTCTTCCTCAAATTT
TTTGATGCCAAGGCCCATCAAAGCCAAGAATATGCACAGTGTTTGCATGCTTTACACCAGTACTAG
AA sequence
>Potri.016G126600.3 pacid=42810406 polypeptide=Potri.016G126600.3.p locus=Potri.016G126600 ID=Potri.016G126600.3.v4.1 annot-version=v4.1
MPCLNISTNVNLDGVNTSAILSEASSQVAKIIKKPESYVMIVLKGSVPISFGGTEQPAAYGELVSVGGLNSDVNNKLSSAIATILESKLSVPKSRFFLKF
FDAKAHQSQEYAQCLHALHQY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126600
[exp]
0 1
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Potri.006G138600
[exp]
4.47 0.8527 CPN21.1
AT1G12910 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYA... Potri.002G220500
[exp]
7.93 0.8298
AT3G60210 GroES-like family protein (.1) Potri.014G044300
[exp]
9.16 0.8513 CPN10.4
AT5G16710 DHAR3 dehydroascorbate reductase 1 (... Potri.017G125100
[exp]
12.88 0.8597
AT2G43710 FAB2, SSI2 suppressor of SA insensitive 2... Potri.013G127300
[exp]
16.55 0.7340
AT4G25550 Cleavage/polyadenylation speci... Potri.015G143300
[exp]
16.97 0.8179
AT1G29040 unknown protein Potri.011G064600
[exp]
17.43 0.7808
AT1G10310 NAD(P)-binding Rossmann-fold s... Potri.004G228533
[exp]
17.88 0.8132
AT5G10730 NAD(P)-binding Rossmann-fold s... Potri.006G268000
[exp]
18.24 0.7823
AT2G34440 MADS AGL29 AGAMOUS-like 29 (.1) Potri.004G131100
[exp]
22.97 0.7736

Potri.016G126600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.