Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G45616 510 / 4e-165 AtRLP6 receptor like protein 6 (.1) AT1G47890 504 / 2e-162 AtRLP7 receptor like protein 7 (.1) AT3G11080 408 / 8e-127 AtRLP35 receptor like protein 35 (.1) AT2G15080 407 / 2e-126 AtRLP19 receptor like protein 19 (.1.2) AT4G13920 392 / 2e-121 AtRLP50 receptor like protein 50 (.1) AT3G05660 390 / 8e-121 AtRLP33 receptor like protein 33 (.1) AT1G71400 389 / 1e-120 AtRLP12 receptor like protein 12 (.1) AT5G27060 390 / 5e-120 AtRLP53 receptor like protein 53 (.1) AT3G11010 379 / 2e-116 AtRLP34 receptor like protein 34 (.1) AT4G13810 352 / 4e-108 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127000 [exp] 1269 / 0 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G127101 [exp] 1261 / 0 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.001G389100 [exp] 605 / 0 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G400500 [exp] 605 / 0 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.001G128400 [exp] 543 / 3e-177 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G437700 [exp] 538 / 1e-175 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G120600 [exp] 519 / 5e-167 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.011G055000 [exp] 505 / 3e-164 AT1G45616 456 / 3e-145 receptor like protein 6 (.1) Potri.011G105150 [exp] 504 / 8e-163 AT1G45616 405 / 3e-125 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003389 [exp] 481 / 3e-153 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10042239 [exp] 461 / 3e-145 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 459 / 7e-145 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003387 [exp] 427 / 6e-133 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 370 / 1e-111 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10016337 [exp] 329 / 7e-97 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 312 / 5e-91 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 307 / 2e-89 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 303 / 2e-87 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 298 / 7e-86 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G126900.1 pacid=42809094 polypeptide=Potri.016G126900.1.p locus=Potri.016G126900 ID=Potri.016G126900.1.v4.1 annot-version=v4.1 ATGGCATCACCTGTGTGTTTCTTAACCATACGGATGCTTTTCCTCGTTTTGCTATCTTTGTTTCATCTTAGAGCATGTTATTCTTCTTCTTCCATGCAAC CTCTATGCCATGAGGATGAGAGTTATGCCTTGTTGCAGCTAAAGGAAAGCCTTGCCATTAATGAGTCCGCCTCTTCTGATCCTTCTGCTTATCCCAAGGT TGCATCATGGAGAGTTGATGGAGAAAGCGGTGATTGCTGCTCTTGGGATGGTGTTGAATGCGATGGGGACTCTGGTCATGTGATTGGCCTTGACCTCAGT AGCAGCTGTCTTCATGGCTCCATCAACTCTAATAGCAGCCTCTTCCACCTTGTTCAGCTCAGAAGGCTGAATCTTTCTGGCAACGACTTCAACAACTCCA AAATGCCATCTGAGATTCGGAATCTCTCAAGGCTGTTTGATCTAAATCTCTCATATTCTAACTTTTCTGGTCAGATTCCAGCGGAGATCTTAGAGCTTTC AAAGTTGGTTTCCCTTGATCTGCGATGGAATTCTTTGAAGCTCCGAAAGCCTGGTCTGCAACATTTAGTTGAAGCATTAACCAACTTGGAGGTGCTCCAT CTCAGTGGAGTGAGCATATCAGCCGAGGTACCTCAAATCATGGCAAACTTGTCCTCTTTGTCATCTCTATTTCTCAGCTATTGTGGATTGCAAGGAGAGT TCCCCATGGGAATATTCCAATTACCCAACCTTCGCTTTCTCAGAATCCGGTATAATCCATATCTCACTGGATATTTGCCGGAATTTCAGTCGGGCAGCCA ACTTGAAATATTGTACCTTACAGGAACAAGTTTCTCTGGCAAGCTACCGGCGTCCATTCGGAACCACAAATCAATGAAAGAACTTGACGTGGCAGAATGT TATTTTTCAGGGGTGATACCATCTTCACTTGGTAATCTTACAAAACTAAACTATCTAGACCTTTCTGATAACTTTTTCTCTGGGAAAATCCCTCCTTCTT TCGTCAACCTTCTTCAACTTACTAACCTGTCGCTTTCTTTCAACAATTTCACATCTGGTACCTTAGATTGGCTTGGTAATCTAACCAAACTCAATCGTGT AGACTTGCGAGGCACCGATTCATATGGTGACATTCCATCATCTCTTAGAAACTTGACTCAGCTCACCTTCTTGGCGCTTAATGAAAATAAATTAACTGGT CAAATTCCATCCTGGATAGGAAACCATACCCAATTAATCTTACTGGGCCTTGGTGCCAACAAACTGCACGGTCCGATTCCTGAGTCTATTTATAGGCTTC AAAATCTTGGAGTACTTAACCTAGAACATAATCTCTTTAGTGGTACTTTGGAATTGAACTTTCCTCTTAAGTTCAGAAACCTTTTTTCACTCCAATTATC TTATAACAATCTGTCTCTGCTTAAGAGCAACAATACTATCATTCCTCTGCCAAAACTCAAAATCTTGACGTTAAGTGGGTGCAATCTAGGTGAATTTCCC AGTTTCTTGCGTGATCAGAACCATTTGGGGATTTTAGATCTTGCCGATAACAAACTGGAGGGACGCATACCCAAATGGTTTATGAACATGAGTACAACAA CCCTCGAGGATCTATATCTGGCTCGCAACCTTCTGACTGGATTTGATCAATCCTTTGATGTTCTTCCATGGAACAATCTACGCTCACTGCAACTTCATTC GAACAAGCTTCAAGGATCCCTTCCAATTCCACCACCAGAAATCTATGCCTATGGAGTCCAGAACAACAAATTGACTGGAGAAATCCCAATAGTTATTTGC AATCTGATTTCGCTCTCTGTCCTTGATTTGTCAAATAACAATTTGAGCGGCAAACTTACGCACTGCTTGGGCAACATAAGCAGCACTGCTTCAGTTCTGA ATCTCCACAACAATAGTTTCAGTGGTGATATTCCCGACACATTCACAAGTGGCTGCTCATTGAAGGTCATTGATTTCAGTGAAAACAAATTGGAGTGGAA GATACCAAAATCATTAGCCAATTGCACCAAGCTAGAGATTCTTAATCTTGAACAAAATAAGATAAATGATGTCTTTCCTTCTTGGTTGGGTATGCTTCCT GATTTGAGGGTTCTCATTTTGAGATCTAATGGGCTACATGGTGTGATTGGGAAACCTGAAACCAACGTTGAATTTCGGAGGTTGCAGATTGTTGACCTCT CCAACAACAGTTTTAAGGGTAAGTTGCCACTTGAATATCTCCGAAATTGGACTGCCATGAAAAATGTCCGTAATGAGCACTTGATTTACATGCAAGTAGG CATAAGTTATCAAATATTTGGTGATTCAATGACAATTCCATATCAATTCTCAATGACAATAACAAACAAAGGTGTGATGAGATTATATGAGAAGATCCAA GATAGTCTCAGTGCTATCGATCTCTCAAGCAATGGTTTTGAAGGAGGAATTCCAGAGGTCCTCGGAGATCTCAAAGAACTTCATTTGCTCAATCTCTCCA ACAACTTTCTCAGTGGTGGCATCCCTCCATCGTTGTCCAACTTGAAAGAGCTTGAAGCTTTGGACCTTTCTCAGAACAAACTCTCGGGAGAGATTCCAGT TAAACTTGCACAGCTCACCTTCCTCGAGGTCTTTAATGTGTCTCACAATTTTCTATCTGGTCCGATACCACGAGGAAACCAATTCGGAACATTTGAAAAC ACTTCATTTGATGCGAATCCAGGATTGTGTGGGGAGCCGTTGTCAAAAGAATGTGGAAATGATGAGGACTCGCTGCCAGCAGCTAAAGAAGATGAGGGCT CGGGATATCCACTTGAATTTGGTTGGAAGGTGGTGGTTGTAGGGTATGCAAGTGGAGTGGTAAATGGAGTGATTATTGGATGTGTTATGAACACAAGGAA GTATGAATGGGTGGTGAAGAATTATTTTGCGAGGCGGCAAAACAAAGAAGTTGATTTCTAA
AA sequence Show only first row Show all	>Potri.016G126900.1 pacid=42809094 polypeptide=Potri.016G126900.1.p locus=Potri.016G126900 ID=Potri.016G126900.1.v4.1 annot-version=v4.1 MASPVCFLTIRMLFLVLLSLFHLRACYSSSSMQPLCHEDESYALLQLKESLAINESASSDPSAYPKVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLS SSCLHGSINSNSSLFHLVQLRRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVSLDLRWNSLKLRKPGLQHLVEALTNLEVLH LSGVSISAEVPQIMANLSSLSSLFLSYCGLQGEFPMGIFQLPNLRFLRIRYNPYLTGYLPEFQSGSQLEILYLTGTSFSGKLPASIRNHKSMKELDVAEC YFSGVIPSSLGNLTKLNYLDLSDNFFSGKIPPSFVNLLQLTNLSLSFNNFTSGTLDWLGNLTKLNRVDLRGTDSYGDIPSSLRNLTQLTFLALNENKLTG QIPSWIGNHTQLILLGLGANKLHGPIPESIYRLQNLGVLNLEHNLFSGTLELNFPLKFRNLFSLQLSYNNLSLLKSNNTIIPLPKLKILTLSGCNLGEFP SFLRDQNHLGILDLADNKLEGRIPKWFMNMSTTTLEDLYLARNLLTGFDQSFDVLPWNNLRSLQLHSNKLQGSLPIPPPEIYAYGVQNNKLTGEIPIVIC NLISLSVLDLSNNNLSGKLTHCLGNISSTASVLNLHNNSFSGDIPDTFTSGCSLKVIDFSENKLEWKIPKSLANCTKLEILNLEQNKINDVFPSWLGMLP DLRVLILRSNGLHGVIGKPETNVEFRRLQIVDLSNNSFKGKLPLEYLRNWTAMKNVRNEHLIYMQVGISYQIFGDSMTIPYQFSMTITNKGVMRLYEKIQ DSLSAIDLSSNGFEGGIPEVLGDLKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGEIPVKLAQLTFLEVFNVSHNFLSGPIPRGNQFGTFEN TSFDANPGLCGEPLSKECGNDEDSLPAAKEDEGSGYPLEFGWKVVVVGYASGVVNGVIIGCVMNTRKYEWVVKNYFARRQNKEVDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127101 [exp]	1.73	0.9790
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.019G016112 [exp]	2.44	0.9791
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	2.82	0.9818
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	3.31	0.9693
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	3.87	0.9768
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	4.24	0.9752
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G144600 [exp]	6.00	0.9713
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028600 [exp]	6.92	0.9714
AT1G25390			Protein kinase superfamily pro...		Potri.010G121100 [exp]	6.92	0.9680
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	7.21	0.9670

Compare expression of checked genes

Potri.016G126900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.