Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 589 / 0 AtRLP7 receptor like protein 7 (.1) AT1G45616 582 / 0 AtRLP6 receptor like protein 6 (.1) AT4G13920 503 / 2e-163 AtRLP50 receptor like protein 50 (.1) AT2G15080 505 / 4e-163 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 481 / 5e-155 AtRLP34 receptor like protein 34 (.1) AT3G11080 468 / 3e-149 AtRLP35 receptor like protein 35 (.1) AT5G27060 465 / 3e-148 AtRLP53 receptor like protein 53 (.1) AT4G13810 448 / 3e-144 AtRLP47 receptor like protein 47 (.1.2) AT3G05660 449 / 3e-143 AtRLP33 receptor like protein 33 (.1) AT1G71400 437 / 6e-139 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127101 [exp] 1713 / 0 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 1391 / 0 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G400500 [exp] 706 / 0 AT1G45616 463 / 2e-148 receptor like protein 6 (.1) Potri.001G389100 [exp] 687 / 0 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G437700 [exp] 611 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G128400 [exp] 594 / 0 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G120600 [exp] 589 / 0 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.011G105150 [exp] 570 / 0 AT1G45616 405 / 3e-125 receptor like protein 6 (.1) Potri.T125004 [exp] 568 / 0 AT1G45616 384 / 9e-117 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042239 [exp] 537 / 4e-174 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 533 / 4e-173 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10026415 [exp] 516 / 3e-166 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10003387 [exp] 470 / 8e-149 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10006825 [exp] 422 / 5e-131 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10014910 [exp] 410 / 4e-128 AT1G71400 357 / 7e-110 receptor like protein 12 (.1) Lus10011064 [exp] 367 / 4e-111 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10016337 [exp] 366 / 2e-110 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 356 / 2e-106 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 353 / 2e-105 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G127000.2 pacid=42809955 polypeptide=Potri.016G127001.1.p locus=Potri.016G127000 ID=Potri.016G127000.2.v4.1 annot-version=v4.1 ATGCCATCATCTCTGAGTTTCTTAACTATGCGGATGCTTTTGTTCTTTTTACTCTCGTTTTTTCATCTTAGAGCTTGTCACTCTTCTCCCTCCATGCAGC CGCTATGCAATGATGAGGAGAGTCATGCCTTGTTGCAGTTCAAGGAAAGCCTTGTCATTAATGAGTCTGCTTCTTCTTATTCTTCTGCATGTCCCAAGGT TGCATCATGGAAAGTTGATGGAGAAAGCGGTGATTGCTGCTCTTGGGAGGGTGTTGAATGCGATCGGGACTCTGGTCATGTGATCGGTCTTGACCTCAGT AGCAGCTGTCTTCATGGCTCCATCGACTCTAATAGCAGCCTCTTCCACCTTGTTCAGCTCAGAAGGCTGAATCTTGCTGACAACGACTTCAACAACTCCA AAATACCTTCTGAGATTCGAAATCTCCCAAGGCTGTTTGATCTAAATCTCTCAATAACTGGCTTCACTGGTCAGATTCCAGCAGAGATCTTAGAGCTTTC CAAGTTGGTTTCCCTTGATCTGGGATTGAATTCTTTGAAGCTCCAAAAGCCTGGTCTGCAACATTTAGTTGAAGCATTAACCAACTTGGAGGTACTTCAT CTCAGTGAAGTGAACATATCAGCCAAGGTACCTCAAGTCATGACAAATTTATCCTCTCTGTCATCTCTATTTCTCAGAGATTGTGGATTGCAAGGAGAGT TCCCCATGGGAATATTCCAATTACCCAACCTACGCTTTCTCAATATCAGGTATAATCCACATCTCACTGGATATTTGCCGGAATTTCAGTTGGGCAACCA ACTTGAAAAATTGTTGCTTGCAAGGACAAGTTTCTCTGGTCAGCTACCGGGGTCCCTTGGGAACCTCAAATCAATGAAAGAATTTGATGTGGCAGGATGT TATTTTTCAGGGGTGATACCATCTTCACTTGGTAATCTTACAAAACTGAACTATCTAGACCTTTCTTCTAACGTTTTCTTTGGGAAAATCCCTCGTTCTG TGGTCAACCTTCTTCAACTTACTGACCTGTCGCTTTCTTCTAATAATTTCAGTTCTGGAACCTTGCATTGGCTTTGCAATCTAACCAAACTCAATTATGT AGACTTGGCTCAGACCAATTCATACGGTGAGATTCCATCCTGTCTTGGAAACTTGACTCAGCTCACCGAGTTAAACCTTGATGCGAATGAATTAACTGGT CAAATTCCATCTTGGATAGGAAACAAAACCCAATTAATCTCACTGGACCTTGGAGACAACAAACTGCACGGTCCAATTTCAGAGTCTATTTTTTGGCTTC CCAATCTTGAAATCCTTGACCTAGAAGAAAATTTATTCAGTGGCACTGTAGAATTTGGCCTTCTTAAGTCAAGAAGCCTTGTTTCCTTCCAATTATCTGG CAATAATTTGTCTGTGATTGGTAACCACAATGATAGTGCTGCTCTGCCAAAAATTCAAATTTTAGGTTTGGGTGGATGTAATTTATCAGGCGAGTTTCCA ACTTTCTTACATGGTCAAAATCACTTGGAGTTTGTAGAACTCGGTGGAAACAAAATTGAGGGGCACATACCAACATGGTTTATGAACTTGGGCACCGAAA CTCTTTGGCATTTAGATCTCAGAGGCAACCTTCTAACAGGTTTTGAGCAATCCGTTGATATTCTTCCATGGAATAATCTACGAAATCTGAGACTTTCTTT CAACAAGCTTGATGGAGCCCTTCCAATTCCACCACATTCCACCATTATCTATATAGTCTCAGACAACCGTTTAAATGGAGAAATCCCACCAGCAATCTGC AATCTGACATCTCTTGTTATCCTCCAATTGTCTAACAACAATTTGAGTGGCAAGCTTCCGCAATGTTTAGGAAACATAAGTAACACTGCTTCAGTACTCG ATCTACGCAACAACACCTTCAGCGGTGACATTCCTGAAGCTTTCTCAAGTGGCTGCACATTGAGGGCAATCGATTTCAGTCAAAACCAATTGGAAGGGAA GATACCAAAATCATTAGCCAATTGTACCAAGCTAGAGATTCTCAATATTGAACAAAACAAGATAACTGATGTCTTCCCTTCATGGTTGGGTATTTTGCCA AAGTTGAGGGTTCTGATTTTGAGATCCAATAGGCTCCATGGCGTGATTGGAAAACCTAAAGCTAACTTTGAATTCCAGAGGTTGCAGATTGTTGATCTAT CCGGTAATTGTTTTTTGGGTAAGTTGCCACTAGAATACTTTCGAAATTGGACTGGCATGAAAACTATCTATAAAGAACACCCGTTGTACATGCAAGTAGA CGCAAGTTTCCAATTACCAAGGTATAGAATGACACTTAATTTTGACTACTCAATGACAATGACCAATAAAGGTGTGGTGACAAAATATGAGAAGATCCAA GAATTTCTCACAGCTATTGATCTCTCAAGCAATCGTTTTGAAGGAGGAATTCCAGATGCTCTTGGAGATCTCAAAGAACTGTATTTGCTCAATCTCTCCA ACAACTTTCTCACTGGTCGCATCCCTCCATCCTTGTCCAACTTGAAAGGGCTTGAAGCTTTGGACCTTTCTCAGAACAAACTCTCGGGAGAGATTCCTGT CCAACTTGCACAGCTCACCTTCCTCGCGGTCTTTAATGTGTCTCACAATCTTCTATCAGGTCCAATACCAAGAGGAAACCAATTCGAGACATTTGACAGC ACTTCATTTGATGCGGATTCAGGATTGTGTGGAAAGCCTTTATCAAAAAAATGTGGAAGTGGTGAGGACTCGTTGCCAGCACCTAAAGAAGATGAAGGCT CAGGATCTCCACTTGAATTTGGTTGGACGGTGGTGGTGATAGGTTATGCAAGTGGATTGGTAACAGGAGCCATTCTTGGATGCGTTATGAACACAAGGAA GTATGAATGGCAAGTGAAGAATTACTTTGTGAGTTGGCAACACAAAGGTCAATATTTGAAGACTCGCCTGCGCGCGTAG
AA sequence Show only first row Show all	>Potri.016G127000.2 pacid=42809955 polypeptide=Potri.016G127001.1.p locus=Potri.016G127000 ID=Potri.016G127000.2.v4.1 annot-version=v4.1 MPSSLSFLTMRMLLFFLLSFFHLRACHSSPSMQPLCNDEESHALLQFKESLVINESASSYSSACPKVASWKVDGESGDCCSWEGVECDRDSGHVIGLDLS SSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFDLNLSITGFTGQIPAEILELSKLVSLDLGLNSLKLQKPGLQHLVEALTNLEVLH LSEVNISAKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPEFQLGNQLEKLLLARTSFSGQLPGSLGNLKSMKEFDVAGC YFSGVIPSSLGNLTKLNYLDLSSNVFFGKIPRSVVNLLQLTDLSLSSNNFSSGTLHWLCNLTKLNYVDLAQTNSYGEIPSCLGNLTQLTELNLDANELTG QIPSWIGNKTQLISLDLGDNKLHGPISESIFWLPNLEILDLEENLFSGTVEFGLLKSRSLVSFQLSGNNLSVIGNHNDSAALPKIQILGLGGCNLSGEFP TFLHGQNHLEFVELGGNKIEGHIPTWFMNLGTETLWHLDLRGNLLTGFEQSVDILPWNNLRNLRLSFNKLDGALPIPPHSTIIYIVSDNRLNGEIPPAIC NLTSLVILQLSNNNLSGKLPQCLGNISNTASVLDLRNNTFSGDIPEAFSSGCTLRAIDFSQNQLEGKIPKSLANCTKLEILNIEQNKITDVFPSWLGILP KLRVLILRSNRLHGVIGKPKANFEFQRLQIVDLSGNCFLGKLPLEYFRNWTGMKTIYKEHPLYMQVDASFQLPRYRMTLNFDYSMTMTNKGVVTKYEKIQ EFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDS TSFDADSGLCGKPLSKKCGSGEDSLPAPKEDEGSGSPLEFGWTVVVIGYASGLVTGAILGCVMNTRKYEWQVKNYFVSWQHKGQYLKTRLRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127000 [exp]	0	1
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G127101 [exp]	2.00	0.9697
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	3.00	0.9671
AT1G30260		AGL79	unknown protein		Potri.004G133180 [exp]	4.47	0.9453
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	7.34	0.9573
AT2G47890	CO	COL13	B-box type zinc finger protein...		Potri.014G134601 [exp]	7.48	0.9535
AT3G50770		CML41	calmodulin-like 41 (.1)		Potri.005G128100 [exp]	7.93	0.9511
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.016G126900 [exp]	8.00	0.9631
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.001G168000 [exp]	8.36	0.9552
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.006G024300 [exp]	10.39	0.8905
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	17.86	0.9388

Compare expression of checked genes

Potri.016G127000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.