Plant FIBer expression Database

Potri.016G127500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08800 612 / 0 SIEL SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000343
[exp]
764 / 0 AT3G08800 602 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
Lus10012221
[exp]
745 / 0 AT3G08800 607 / 0.0 SHORT-ROOT interacting embryonic lethal, ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.016G127500.2 pacid=42810268 polypeptide=Potri.016G127500.2.p locus=Potri.016G127500 ID=Potri.016G127500.2.v4.1 annot-version=v4.1
ATGGAGCATCAGTTGCTTCACACATGCCTGCAATCTCTCAATGACAACAATAATCCTCTCTCTCTACAAGCCCTAGCTTCTCTTCGCTCTCTAATAATCA
ACCCTAACACCTCTGATTCCACGATCTATTCAATCCTCGAAACCCTGACTTGCTCTCTCCAACTCCGCACCAACTCACTCACAACTCACCACCACATCCT
CAAACTCCTCACTGACCTTGCTTCACACCGCACTCACCTCTCCTCTCAAATCCTCAACACAATCCACTATAGCTCGCTCCTCTTTACAGAGTCAATTCAA
ATTGCCACCGAGTCACTCACTTCACTCGCTTCGATTGCCAATTCTGATCACAACAAAATCGATGATCAGTTATTTATGTCCCTGTGTTTTGCTGCCACTT
CAACTTCCGCTCGATTGCGGCTGCTCAGAAATGGAGAGAGGTTAGGCATAGGGATGCACGTGCTGTTTACTATGTTTTTAGGGTTTACGGAAGATCCTTA
CCCATATGTGAGAAAGGCTTCTTTGGATGGATTGCTAGGGTTGTGCAAAAGTGGCAATGTTTTTGAAGATATCAGTGTGATTGAAGGTTGTTATTTCCGT
GCTGTTGAGCTTCTACAAGATAATGAGCATTCAGTACGCTCTGCTGCAATCCGCGTGGTAAGTGAATGGGGGCAAATGCTTATAGCAGCAAAGGAAGAGA
ATGATAAAATAGATTGGTCAAATCAAGTATTTGTGCAGCTCTGTTCTATGGTAAGAGATATGAGTGTGGAGGTCAGGGTGGAAGCTTTTAATGCTCTTGG
CAAGATAAAGTTGGTGTCTGAGGACATTTTATTGCAAACTATATCAAAAAAAGTCCTAGCAATCATGAAAGAGAAGAACTCTCATGGTCAGTGTACAGCA
GAAAGGTTTGAGATTTTGGCATCTAGTTATGCTGGAGCTTTTGTGCATGGGCTTGAGGATGAATTCCATGAGGTGCGAAAATCTGCTTGTAACTCTTTGC
GCATTCACACTATCCTCTATGCTGAGTTTGCTCGTCGGTCCTTAAGCTTGTTGATGGACATGTTGAATGATGATTCAATGGCTGTAAGGTTAGAAGCTTT
AGAAACACTGCATCACATGGCAACCTTTGAGTGTCTGCATGTGCAAGAGATACACATGCACATGTTTCTGGGCTCTCTACTTGATAACTGTGATCTAATA
AGATCAATCGCAAGAAAAATTTTTAAATTGGTGAAGCTGTCCGATTTTAAATTATTTAGATCATCTATTCATGGCCTCCTTCAGAACTTGGAGAGATATA
CAAAGGATGAAGCTGATGTCTTCTCTGTTTTGTTTTTTATGGGTCGAAGCCATGGGAACTTTGCTGCTCGTGTTGTCAAGGAAGTTTCTCAAGAGATAGA
GCCAGTTTTGGAGGGAAAATTGGTCTTGGATAGTGCAAGAGTAGCTGCGTTTCTTGTACTTGCCATCTCAGCTCCACTCTCACAAAATCAGAATGGTCAA
AACATTCCACCTAGATTATTTTCTTATGCAGTAACCCTGCTAGGGAGGATCTCTTCTGCTTTGAGAGAAGTTGTAGACCAAGATACACTTTTGGCATATT
TGTCTCGGTGCAGTAGATCCTCCACTCGTGGCACAGAAGTGGAGGAGTCGTCATTATTGCCAGTTGTTGATGATGCTGTTTTAACTCATAGCAGAAAGGA
TGTCAATAATCCCGTTGGGGTGCCCATGCTACAAACTGGCAATGAAACTTCCAAAGTTCAGCCTGTGATATCATGTGAATTAGAGGATTTAGCAACTTCA
ATTGTAGAATGCCAGGCAGACGAGCTTGACGAAGTCATGAAATCTGTGAACCTTATCCTTGCAAGGGTCAGAGATGCCTGGCTTTTGGTACAATCAAGGT
GCACCAATGTAGCAGTGAGAGCTCTGAGGGATTGCAAGAGAGAATTGGCAGTGTTAACCTCTGCATCGCTTGAATCTGCTGGTATATTGGCATTTACGAT
GCAATACCTCCAGGTAATGAAACTGTTTGCTAAGATATGGGAGCACGTTGTATGGAAGATAAGGTCCGATGAAACAGGAGGACTGGAATATCTATTTGGG
AAACTAGACGTGAGGCTCAGAGAACTGAGGTATAGATATATAGGGTTTTCCAAGGAAGAGGAGTTGTATGTGTTGGAGCTTATAGTTGTGGCCTGTATGT
TAAGGTTATCCAAAGTTGAAATCTGCTGCTCTCCTACTACATTGAAAAAATTGTCTGCTATAATTTCACATATAGAGATTCTCAATGATAAAGGACCCAT
GGAACCATCCAATATTTTAATGGACGCTAAGAAAACAGTGCATGAGATTGAGTCTTCTAAAGCTGGTATCTCATGCAGTCTCTTCCTGATTACAAACTTA
GTTGATTTCTTCACCCTTAAGCAGTTTAGTTTATGCCCAAGAGTAAGGCATATAAATGCAGAACTGGATGTTCCTGGTAATGATTCTGAAAATCCTCTTC
CTTTTGTCTCTGGACTACCTGTGGCTATACCTCTGGATATTACTTTATACAATGTCAGTAGTGAGAATAGGTTGTGGCTTACGATAAGAATGAGTCAGGA
GTCAACTCAATTTGTCTTCTTAGATTCGAACATATTAGGAGGCTGCAATGAGGTCAAGAAATTTACATTTATGGCACCCTTTTACAGAACTCCAAAAGCT
CGTTCATTCTCATCATGGATTAGTATAGGCATGGAATGTGCTCTTGAGGATTGTCACTTAGTGAAACACTGTGGAGGTCCAAAACGCAAATTGGTTTATC
TTTGCCAGGAAAAAGAAGTTCATTTGTGCTTGGTTCGGAGGGACTGA
AA sequence
>Potri.016G127500.2 pacid=42810268 polypeptide=Potri.016G127500.2.p locus=Potri.016G127500 ID=Potri.016G127500.2.v4.1 annot-version=v4.1
MEHQLLHTCLQSLNDNNNPLSLQALASLRSLIINPNTSDSTIYSILETLTCSLQLRTNSLTTHHHILKLLTDLASHRTHLSSQILNTIHYSSLLFTESIQ
IATESLTSLASIANSDHNKIDDQLFMSLCFAATSTSARLRLLRNGERLGIGMHVLFTMFLGFTEDPYPYVRKASLDGLLGLCKSGNVFEDISVIEGCYFR
AVELLQDNEHSVRSAAIRVVSEWGQMLIAAKEENDKIDWSNQVFVQLCSMVRDMSVEVRVEAFNALGKIKLVSEDILLQTISKKVLAIMKEKNSHGQCTA
ERFEILASSYAGAFVHGLEDEFHEVRKSACNSLRIHTILYAEFARRSLSLLMDMLNDDSMAVRLEALETLHHMATFECLHVQEIHMHMFLGSLLDNCDLI
RSIARKIFKLVKLSDFKLFRSSIHGLLQNLERYTKDEADVFSVLFFMGRSHGNFAARVVKEVSQEIEPVLEGKLVLDSARVAAFLVLAISAPLSQNQNGQ
NIPPRLFSYAVTLLGRISSALREVVDQDTLLAYLSRCSRSSTRGTEVEESSLLPVVDDAVLTHSRKDVNNPVGVPMLQTGNETSKVQPVISCELEDLATS
IVECQADELDEVMKSVNLILARVRDAWLLVQSRCTNVAVRALRDCKRELAVLTSASLESAGILAFTMQYLQVMKLFAKIWEHVVWKIRSDETGGLEYLFG
KLDVRLRELRYRYIGFSKEEELYVLELIVVACMLRLSKVEICCSPTTLKKLSAIISHIEILNDKGPMEPSNILMDAKKTVHEIESSKAGISCSLFLITNL
VDFFTLKQFSLCPRVRHINAELDVPGNDSENPLPFVSGLPVAIPLDITLYNVSSENRLWLTIRMSQESTQFVFLDSNILGGCNEVKKFTFMAPFYRTPKA
RSFSSWISIGMECALEDCHLVKHCGGPKRKLVYLCQEKEVHLCLVRRD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08800 SIEL SHORT-ROOT interacting embryon... Potri.016G127500
[exp]
0 1
AT2G01130 DEA(D/H)-box RNA helicase fami... Potri.010G117800
[exp]
3.74 0.8784
AT1G20300 Pentatricopeptide repeat (PPR)... Potri.005G066700
[exp]
7.21 0.8616
AT2G24350 RNA binding (RRM/RBD/RNP motif... Potri.012G145100
[exp]
7.41 0.8752
AT1G09820 Pentatricopeptide repeat (PPR-... Potri.005G014500
[exp]
9.79 0.8699
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Potri.001G341900
[exp]
10.67 0.8733
AT4G21670 FRY2, FLP1, ATC... FIERY 2, C-terminal domain pho... Potri.011G049400
[exp]
11.13 0.8766
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Potri.013G006000
[exp]
11.22 0.8698 MOM.2,1
AT5G47010 ATUPF1, UPF1, L... LOW-LEVEL BETA-AMYLASE 1, RNA ... Potri.001G148100
[exp]
12.48 0.8780
AT3G01610 CDC48C, EMB1354 embryo defective 1354, cell di... Potri.013G151600
[exp]
16.12 0.8214 CDC48.4
AT4G13750 EMB2597, NOV NO VEIN, EMBRYO DEFECTIVE 2597... Potri.001G317200
[exp]
17.43 0.8576

Potri.016G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.