Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01660 628 / 0 unknown protein AT3G11000 191 / 2e-53 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2) AT3G27090 110 / 2e-26 DCD (Development and Cell Death) domain protein (.1) AT2G35140 110 / 7e-25 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) AT2G32910 108 / 2e-24 DCD (Development and Cell Death) domain protein (.1) AT5G42050 105 / 2e-24 DCD (Development and Cell Death) domain protein (.1) AT5G61910 92 / 4e-19 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) AT1G27420 61 / 1e-09 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G02990 56 / 5e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G22040 56 / 6e-08 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074200 [exp] 581 / 0 AT5G01660 488 / 2e-164 unknown protein Potri.017G069100 [exp] 113 / 2e-27 AT3G27090 426 / 1e-151 DCD (Development and Cell Death) domain protein (.1) Potri.003G141900 [exp] 112 / 1e-26 AT5G42050 285 / 4e-94 DCD (Development and Cell Death) domain protein (.1) Potri.001G330300 [exp] 110 / 1e-26 AT3G27090 424 / 6e-151 DCD (Development and Cell Death) domain protein (.1) Potri.001G088800 [exp] 112 / 2e-26 AT5G42050 289 / 2e-95 DCD (Development and Cell Death) domain protein (.1) Potri.019G066100 [exp] 99 / 3e-23 AT3G27090 251 / 2e-83 DCD (Development and Cell Death) domain protein (.1) Potri.015G122300 [exp] 103 / 2e-22 AT2G35140 211 / 4e-56 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3) Potri.001G136300 [exp] 94 / 2e-20 AT5G61910 180 / 2e-50 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3), DCD (Development and Cell Death) domain protein (.4) Potri.013G029200 [exp] 95 / 4e-20 AT2G32910 187 / 3e-51 DCD (Development and Cell Death) domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018307 [exp] 340 / 3e-106 AT5G01660 276 / 3e-82 unknown protein Lus10012220 [exp] 261 / 2e-80 AT5G01660 224 / 1e-66 unknown protein Lus10040599 [exp] 211 / 3e-61 AT5G01660 179 / 8e-50 unknown protein Lus10023059 [exp] 116 / 5e-28 AT5G42050 355 / 8e-122 DCD (Development and Cell Death) domain protein (.1) Lus10032412 [exp] 115 / 1e-27 AT5G42050 359 / 1e-123 DCD (Development and Cell Death) domain protein (.1) Lus10041557 [exp] 113 / 2e-27 AT3G27090 428 / 2e-152 DCD (Development and Cell Death) domain protein (.1) Lus10012533 [exp] 112 / 3e-27 AT3G27090 432 / 5e-154 DCD (Development and Cell Death) domain protein (.1) Lus10001728 [exp] 106 / 1e-23 AT2G32910 208 / 1e-57 DCD (Development and Cell Death) domain protein (.1) Lus10004128 [exp] 105 / 3e-23 AT2G32910 219 / 3e-60 DCD (Development and Cell Death) domain protein (.1) Lus10018316 [exp] 98 / 6e-21 AT2G35140 185 / 3e-48 DCD (Development and Cell Death) domain protein (.1), DCD (Development and Cell Death) domain protein (.2), DCD (Development and Cell Death) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif CL0186 [poplar] [flax] PF10539 [poplar] [flax] Dev_Cell_Death Development and cell death domain
Representative CDS sequence Show only first row Show all	>Potri.016G127600.1 pacid=42810133 polypeptide=Potri.016G127600.1.p locus=Potri.016G127600 ID=Potri.016G127600.1.v4.1 annot-version=v4.1 ATGGAAAAAGGTGGGCGGGTGTCAAGTAACCTGGCGATTGACAATATGTATGCTAGAAATTTGAAGAAGAGTCAGCTTGGAGGTGTAATATTTGTTTGTA CGAACAATACGATAAGAGAGTGCTTATCCAAACAACTCTTTGGTTTACCGGGTCAGCATTTTTCTTATGTAAAGAATGTTGATCCCGGCCTGCCTCTCTT CCTATTCAACTATAGTGACAGGAAACTTTATGGGATATATGAGGCTGCTAGCTCTGGCCAAATGAACATAAACCCGTATGGCTGGACCAGTGATGGTGCA CAAAGAACACCATATCCTTCCCAGGTTCAAATTCACGTGCGGCTGCAATGTCAACCACTGCGTGAAGAACAATTTAAACCGATTATTGCAGATAACTACT ACAATCATAATCATTTCTGGTTTGAGCTTGACCATGTTCAAACCAGTAAGCTGATGTCCTTATTAGCATCTTTAGCTGTTTCCCCTGGCACCTGTGTACT GACACAGAAGATAGAGAAGTGGAGAAACATGTTCCAACCTGGTCCCTTGTCTAAATCAAGAGAGGAAGATGAAGGAGACAACTTGCCTGCTTCAGAAATT GACCACACTGATAATTCAAGTACAAAATCAGATTCTACACACATTGCTTCTTCAGATGTAGATAATCAACCAGTGAAAGATCAGTTGGGTGTGACAGCAG TGGAACAAGAAGAGAAAGAGCTAATATTCAAGAAGCTGCAAGAATTGGCTCTCAGATCTGAACCTCAAGCCTCTTCTGTGAGGGATGGCACAGAAGATTC TCCTCCTTTACATGATATGCACTTGGAGGAGAAGGCTTCTGCAGAGGCGCAGATGGGTTCAGAGGAAAAGAATGATGTCAATCCTTGTACATTTTGTCAA TCTACCATTGCTCAGTTGGCTAAAGGGATGGAAGAGCTTAAGGCTTTTAGAACAGAACAAACTCTGAAGATGGGTTATTTAGAACAGAAGCTGGTTGAGG CTGAAGAACAAATTCAACAGTTGAAAGATCGGTGTATGATGTTGGAATCCATGTCTAATCCTTCCAAGGCAGACATTGATGAAACAGTCAATAATTTGTT TGACGAGGAGCAATTGGATCCTACTGATGCCATCCATCTGATGGGGGGATATGATGGTGAATCGTGGTTGTCGACTTTCAGTTTATATTTTCCCTCTCAA GATGTAGTGAAATCTTTGAGGCCCATGAGCTCTGTCCGGTCATATGCTTCAGTTGTACAGTTTCATGAAGAGCTTTATGTATTTGGTGGTGGGAATGGCC AGTTGTGGTATGACACGGTTGAATCATACAATCCAGCAAATGATCAATGGACCCCTCGCCCATCGTTGACTGGGAAGAAAGGGAGTTTGGCTGGGGCTAC TTTAAATGACAAAATATTTGCCATGGGTGGTGGAAATGGGGTTGAATGCTTTGCAGATGTTGAAATGCTTGTTTTAGATATTGGAAAGTGGATCCCAACA AGGTCGCTGCTACAGAAGCGATTTGCTCTTGCAGCTGTGGAACTCAATGGTGTACTTTATGCAACTGGTGGATTTGATGGGAGTGATTATTCAAAGACTG CTGAAAGATTTGATCCCAGAGAACATTCTTGGAGCAGAATTGCAAGCATGAATGCAAAGAGGGGCTGCCATTCATTGGTTGTTTTGAATGAAAAACTATA TGCTTTGGGTGGTTATGATGGAAGCACAATGGTTTCAAGCACAGAAATATTTGATCCTCGTCTTGACTCGTGGATCCCTGGGGAACCCATGAACAAGCCT AGAGGCTATGCCGCCGCCGCCGCCATTAAGGAATCGATATATGTTGTTGGAGGGCTGGAATCTGATGAGAACATGATAGATACCGTTGAACATTTCAAGC AGGGTCAGGGATGGCAAGAAAAGAAGTCCAGGGCCATCAAGAAAAGATGCTTTTTGTCTGCTATTGCTTTGTAA
AA sequence Show only first row Show all	>Potri.016G127600.1 pacid=42810133 polypeptide=Potri.016G127600.1.p locus=Potri.016G127600 ID=Potri.016G127600.1.v4.1 annot-version=v4.1 MEKGGRVSSNLAIDNMYARNLKKSQLGGVIFVCTNNTIRECLSKQLFGLPGQHFSYVKNVDPGLPLFLFNYSDRKLYGIYEAASSGQMNINPYGWTSDGA QRTPYPSQVQIHVRLQCQPLREEQFKPIIADNYYNHNHFWFELDHVQTSKLMSLLASLAVSPGTCVLTQKIEKWRNMFQPGPLSKSREEDEGDNLPASEI DHTDNSSTKSDSTHIASSDVDNQPVKDQLGVTAVEQEEKELIFKKLQELALRSEPQASSVRDGTEDSPPLHDMHLEEKASAEAQMGSEEKNDVNPCTFCQ STIAQLAKGMEELKAFRTEQTLKMGYLEQKLVEAEEQIQQLKDRCMMLESMSNPSKADIDETVNNLFDEEQLDPTDAIHLMGGYDGESWLSTFSLYFPSQ DVVKSLRPMSSVRSYASVVQFHEELYVFGGGNGQLWYDTVESYNPANDQWTPRPSLTGKKGSLAGATLNDKIFAMGGGNGVECFADVEMLVLDIGKWIPT RSLLQKRFALAAVELNGVLYATGGFDGSDYSKTAERFDPREHSWSRIASMNAKRGCHSLVVLNEKLYALGGYDGSTMVSSTEIFDPRLDSWIPGEPMNKP RGYAAAAAIKESIYVVGGLESDENMIDTVEHFKQGQGWQEKKSRAIKKRCFLSAIAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01660			unknown protein		Potri.016G127600 [exp]	0	1
AT1G13810			Restriction endonuclease, type...		Potri.010G222500 [exp]	2.00	0.7911
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	2.82	0.7903	Pt-ARP4.1
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.004G212700 [exp]	6.24	0.7644
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Potri.015G073700 [exp]	8.00	0.7309	RDR904
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	8.36	0.7034
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	8.48	0.7114
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.008G075900 [exp]	10.48	0.7202	DCL903
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	10.58	0.7377
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.012G054200 [exp]	12.72	0.6713
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.001G117200 [exp]	13.78	0.6880

Compare expression of checked genes

Potri.016G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.