Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51670 640 / 0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G72160 364 / 3e-122 Sec14p-like phosphatidylinositol transfer family protein (.1) AT4G09160 346 / 4e-113 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G30690 318 / 1e-103 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22530 280 / 9e-88 PATL2 PATELLIN 2 (.1) AT1G72150 261 / 1e-81 PATL1 PATELLIN 1 (.1) AT4G36490 87 / 4e-18 ATSFH12 SEC14-like 12 (.1) AT4G39180 86 / 1e-17 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39170 86 / 1e-17 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G18180 85 / 2e-17 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G138200 [exp] 368 / 2e-122 AT1G72160 457 / 2e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G105900 [exp] 367 / 2e-122 AT1G72160 574 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079300 [exp] 362 / 4e-120 AT1G72160 545 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G461400 [exp] 355 / 3e-118 AT1G30690 497 / 4e-172 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.T011101 [exp] 357 / 5e-118 AT1G72160 452 / 4e-154 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.T011100 [exp] 355 / 2e-117 AT1G72160 454 / 6e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.013G106000 [exp] 355 / 4e-117 AT1G72160 457 / 6e-156 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.019G079500 [exp] 343 / 2e-112 AT1G72160 439 / 1e-148 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G224800 [exp] 266 / 1e-84 AT1G30690 333 / 4e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001269 [exp] 676 / 0 AT3G51670 602 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10012219 [exp] 613 / 0 AT3G51670 564 / 0.0 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10038435 [exp] 350 / 3e-116 AT1G30690 513 / 2e-178 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10001542 [exp] 345 / 1e-114 AT1G72160 450 / 8e-155 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10009453 [exp] 296 / 2e-98 AT1G72160 389 / 9e-134 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10001539 [exp] 290 / 1e-95 AT1G72160 490 / 1e-173 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10031752 [exp] 290 / 1e-91 AT1G30690 412 / 4e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10003552 [exp] 274 / 3e-87 AT1G30690 290 / 4e-92 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033895 [exp] 212 / 2e-61 AT1G30690 218 / 1e-62 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10031175 [exp] 188 / 3e-57 AT1G30690 273 / 2e-89 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF00650 [poplar] [flax] CRAL_TRIO CRAL/TRIO domain CL0214 [poplar] [flax] UBA PF03765 [poplar] [flax] CRAL_TRIO_N CRAL/TRIO, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.016G127700.1 pacid=42810591 polypeptide=Potri.016G127700.1.p locus=Potri.016G127700 ID=Potri.016G127700.1.v4.1 annot-version=v4.1 ATGGATGCTTCATCACCTATTTCACTTCAACAAACACCTCACCAAGACTATTCAGTATCTGAAGCCTCGCCAAAACCATACAAGAAAAGCTTTGTTACCT CTTTGATGGAAGCAGCTGCTTTACGTACTCCTTCTTTCAAAGAAGACACTTACTTCATTTCCCACCTAAAAAATTCAGAGAAGAAGGCACTTCAAGAACT AAGAGACAAACTCTCAGTTTCTTATGGGTCTGACGCTACTAGTGAATGTTCCATGTGGGGTATTCCTCTTTTAAGCAATGATGAAAAAGCTGATGTGATT TTGCTCAAGTTTTTGAGAGCTAGGGATTTTAGAGTTCAAGATTCACTTCACATGTTAGAAAAGTGTCTGTCTTGGAGAAAAGAGTTCGGGGCTGATGACG TAGTGGAGGAGGATTTGGGGTTTAAAGAACTTGAAGGTGTTGTCGCTTACATGCATGGTTATGATAGAGAAGGTCATCCAGTTTGTTACAATGCTTACGG GGTTTTTAAAGATAAAGAAATGTATGAGAGGATTTTCGGTGATGAAGAGAAGCTAAAGAAGTTCTTAAGGTGGAGAGTTCAGGTTCTTGAAAGAGGGATT AGTCTTTTGCATTTTAAGCCTGGAGGTGTTAACTCCATTATCCAAGTTACTGATCTTAAAGACATGCCTAAAAGAGAGCTTAGAGTTGCTTCTAATCAGA TCCTGTCCTTGTTTCAAGATAATTACCCTGAAATGGTTGCGCGTAAGATTTTCATCAATGTGCCGTGGTACTTCAGCATGCTGTACTCCGTGTTCAGTCC CTTCTTGACTCAGCGAACTAAGAGCAAGTTTGTGATCTCCAAGGAAGGAAATGTTGCAGAAACACTTTACAAATTTATTAGGCCTGAGGATGTTCCAGCT CAGTATGGAGGACTGAGTAGACCCAGTGATCTGCAGAATGGCCCTCCTAAGCCAGCCTCTGAGTTTACTGTCAAGGGAGGAGAGAAAGTGAATATTCAGA TTGAAGGAATTGAGGCCGGTGCAACAATAACATGGGACATAGTGGTTGGGGGCTGGGACTTGGAGTACAGTGCTGAGTTTGTGCCCAACGCCGCAGGAAG CTATACCATTGCGGTGGAGAAGGCAAGGAAGATTGCACCATCAGAAGAAGCAATTCGCAATTCATTTACGCCAAGAGAAGCTGGCAAAATGGTGCTCTCA GTGGACAACACCTTCTCCAGGAAAAAGAAGGTCGCAGCATATCGATACTTTGTTCGCAAAGCCGCCATTGCCTAA
AA sequence Show only first row Show all	>Potri.016G127700.1 pacid=42810591 polypeptide=Potri.016G127700.1.p locus=Potri.016G127700 ID=Potri.016G127700.1.v4.1 annot-version=v4.1 MDASSPISLQQTPHQDYSVSEASPKPYKKSFVTSLMEAAALRTPSFKEDTYFISHLKNSEKKALQELRDKLSVSYGSDATSECSMWGIPLLSNDEKADVI LLKFLRARDFRVQDSLHMLEKCLSWRKEFGADDVVEEDLGFKELEGVVAYMHGYDREGHPVCYNAYGVFKDKEMYERIFGDEEKLKKFLRWRVQVLERGI SLLHFKPGGVNSIIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSVFSPFLTQRTKSKFVISKEGNVAETLYKFIRPEDVPA QYGGLSRPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAAGSYTIAVEKARKIAPSEEAIRNSFTPREAGKMVLS VDNTFSRKKKVAAYRYFVRKAAIA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51670			SEC14 cytosolic factor family ...		Potri.016G127700 [exp]	0	1
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	2.23	0.7682
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.008G146600 [exp]	11.74	0.7638	CYCD1.2
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	13.41	0.7149
AT3G46540			ENTH/VHS family protein (.1)		Potri.009G030500 [exp]	13.96	0.7116
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	16.49	0.7306
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Potri.006G242800 [exp]	23.87	0.7249
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	24.00	0.7124
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Potri.016G068200 [exp]	27.65	0.7253
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.009G070800 [exp]	28.82	0.7314	LRP1.2
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.001G067700 [exp]	57.23	0.6732

Compare expression of checked genes

Potri.016G127700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.