Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCHX27.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01680 436 / 9e-142 ATCHX26 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) AT2G13620 427 / 1e-137 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 367 / 1e-114 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G22900 356 / 9e-111 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT5G58460 353 / 2e-109 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT3G44900 352 / 3e-109 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G37060 348 / 1e-107 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT2G30240 343 / 1e-105 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G01690 340 / 1e-105 ATCHX27 cation/H+ exchanger 27, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 27, cation/H+ exchanger 27 (.1) AT1G05580 324 / 3e-98 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G123800 [exp] 448 / 1e-146 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 429 / 2e-138 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 407 / 5e-130 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 404 / 3e-129 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 395 / 5e-126 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 351 / 2e-109 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G182900 [exp] 341 / 1e-105 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G171200 [exp] 340 / 4e-105 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176400 [exp] 335 / 3e-103 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026408 [exp] 441 / 6e-143 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 424 / 2e-136 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 420 / 2e-134 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 364 / 6e-114 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10026398 [exp] 345 / 2e-106 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10041344 [exp] 343 / 4e-106 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 338 / 2e-104 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10042254 [exp] 337 / 3e-103 AT5G37060 659 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10016153 [exp] 335 / 4e-103 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10031283 [exp] 330 / 7e-101 AT5G37060 672 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.016G127800.1 pacid=42810530 polypeptide=Potri.016G127800.1.p locus=Potri.016G127800 ID=Potri.016G127800.1.v4.1 annot-version=v4.1 ATGAATCAAAATTCTACCACAGAATTAGTTTGCGAGGCATTTGAGGCGCATAAGATGATACGTTTTAAGCATGATGATGAAAATTACTTCAGTTTCTCAC CTGTGCTTGTGCAGATTGGTTTAGTTACTCTTTTAAAAACATTTTTTCAGTTCCTTCTCATGCCTTTTGGACAGCAGCGTTTTGTTCCGGAAATCCTGGG TGGAATTGCCATAAGCCCTTCATTTCTTGGACATATGGAAAGAATTAATAAATATTTGTTTGCACCAAGGAGTGTGATGATTCTTGATACCTTTGAAGTG TTTGGTCTCGTATTCGTTCTTTTCCTGCTTAGCTTACGGCTGGATATAACCGTCGTGAAGAAATGTGGGAAACTTGCAGTTGTTATAGGCCTTGCTTCTT TTTTGGTTCCGACGGTGATAACAACACTAATAGCTTCGTATCTAAGAGGATTCTTTAAATTGGAGCTTCACGAGGAGGTCCATGTCGTGGCTGTTATTAT ATCAACAACTTCCTTCCATGTTGTTTTTTCCATCCTTGAAGATCTCAAGCTCCTCAATTCAGAACTAGGCCGCCTTGCTCTCTCTTCTTCAATGGTCAGT GGATTGTTCAGCTGGAGTTTTATAGTATTTTTGGCTAATTTCAAAGAAGCCTCGAAGCTTGGTTCAAAGAAAGGTATAATATTAGCGCAGATAACCAGAA TCCCCATGATTATGATCATTGTTTTCGCTTTCCGACCTATGATGTGGTGGATGGTAAGACGAACCCCTGAGGGACAGCCTCTGAAGCAGTCATATATTTT GATTATCAGTACTATGGTTCTTTTCTGTGGTTTTTTGGGGGAAATCAATGGACATCATTTTCTTTTTGGACCTCTGGTCTTAGGCTTAGCTACCCCTGAT AATCCGCAGCTGCATTCTTGCTTGATGGAGAAGATTGGTACCTTTGTTAATTCATTTCTAGTGCCATGTTTCCTTGTAGATGTTGGCAGAGGAATCAATT TGTTCCTTGCCACATTCAAACATGTTGCATTTGCGCTAATGCTCGTCTTTATATCTACCTTGACCAAACTTTCTGCCATTATAGCCACTTCACTCTATTA CAAGATGCCATTTCGGGATGCTCTCTCGCTCGGTCTCATCTTGAATTGCAAAGGTTTCGTCGATGCACTATTATACAACGCTGCAAATAAGTTCGAGGGG CTAAAAACTGAGCTTTTTAGCATCCTGGTTGTCACAGCAATGCTGCAATCGGTGTTTGTTACCCTGTTAGTGAGACTTCTCTATGACCCTTCAAGAAGAT ATATAGCCTACAAACCACGCACAATCCAGAACACCGGACTCCGTTCTGAGCTACAAATCGTTGCCTGTCTCCATCAACAAGATGATGTCCGCTCCATTAT CAATGTTCTTGAAGCAACCAATCCAACCAGGGCAAGCCCCATAGCGGTTTATGTTTTGAACCTTAAGAAGTTGATAGAAGGCGCCTTGCCGCTTTTCATA TCGCACAGATTGAACAATATTTCATCTGCTGAGAAAATCGACATTGTCAGCAACGCCTTCTATCAATTTGAACAGCAAAATCAAGGTCTTGTTACTGTGC AATGCTTCACATCCTTCGCACCTTATGCTACAATGCACGACGACGTTTGCACTATGGTACTAGAGAAGAGTACCTCCTTGGTGATCGTTCCTTTTCAACG CTATGATAGCCCTTCAATGAGGGCAGTCAACAGGAACATACTCGTAAAGGCTCCATGTTCTGTCGCTCTCCTTGTTAACCGTGGGAATTTGGATCGATAT ATTTTATCAGGTCGACTCACAATGAAGGTCTGTGTGGTTTTCATAGGAGGGGCTGATGATCGTGAGACGCTAGCATACGCTCAACGCATGTCCGGGCATC CCAACATCAGGCTGATAGTGCTCAGATTAGTCTCTGTGGACCAAACTTTTACTGATTTGATAGAGAAAAGACGCAACTCGAACATGATCAATGAATTCAG GCTCAACAATAACGACTGCCCGCGTGTTTCATATAAGGAAGAGATGGTTAGACATGGAAATGACACCGTTCGGTTGCTGGGAGCCATGTGCAACGATTTT GATCTCATTATGGTGGGAAGAAGACATGATCCTGATTCTACACAGTTAATTGGACTATCAGAGTGGGGTGAGATTGATCAGGATTTGGGTGTAATCGGAG ACATAATGGCATCTAAAGACTTTGAGTGCAAGGCATCCATATTGGTGGTGCAACAACAAGCTTCGGTGGTGGTAGAGATGATTCAAAACCAAAAATACGT ATCCATTTATAATTCTGATAGATAG
AA sequence Show only first row Show all	>Potri.016G127800.1 pacid=42810530 polypeptide=Potri.016G127800.1.p locus=Potri.016G127800 ID=Potri.016G127800.1.v4.1 annot-version=v4.1 MNQNSTTELVCEAFEAHKMIRFKHDDENYFSFSPVLVQIGLVTLLKTFFQFLLMPFGQQRFVPEILGGIAISPSFLGHMERINKYLFAPRSVMILDTFEV FGLVFVLFLLSLRLDITVVKKCGKLAVVIGLASFLVPTVITTLIASYLRGFFKLELHEEVHVVAVIISTTSFHVVFSILEDLKLLNSELGRLALSSSMVS GLFSWSFIVFLANFKEASKLGSKKGIILAQITRIPMIMIIVFAFRPMMWWMVRRTPEGQPLKQSYILIISTMVLFCGFLGEINGHHFLFGPLVLGLATPD NPQLHSCLMEKIGTFVNSFLVPCFLVDVGRGINLFLATFKHVAFALMLVFISTLTKLSAIIATSLYYKMPFRDALSLGLILNCKGFVDALLYNAANKFEG LKTELFSILVVTAMLQSVFVTLLVRLLYDPSRRYIAYKPRTIQNTGLRSELQIVACLHQQDDVRSIINVLEATNPTRASPIAVYVLNLKKLIEGALPLFI SHRLNNISSAEKIDIVSNAFYQFEQQNQGLVTVQCFTSFAPYATMHDDVCTMVLEKSTSLVIVPFQRYDSPSMRAVNRNILVKAPCSVALLVNRGNLDRY ILSGRLTMKVCVVFIGGADDRETLAYAQRMSGHPNIRLIVLRLVSVDQTFTDLIEKRRNSNMINEFRLNNNDCPRVSYKEEMVRHGNDTVRLLGAMCNDF DLIMVGRRHDPDSTQLIGLSEWGEIDQDLGVIGDIMASKDFECKASILVVQQQASVVVEMIQNQKYVSIYNSDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01680		ATCHX26	cation/H+ exchanger 26, ARABID...		Potri.016G127800 [exp]	0	1	ATCHX27.1
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107600 [exp]	3.31	0.7500
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.002G119200 [exp]	7.93	0.7389
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	10.09	0.7170
AT3G19620			Glycosyl hydrolase family prot...		Potri.007G114300 [exp]	15.90	0.6498
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.003G218300 [exp]	16.49	0.6316
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.011G040200 [exp]	19.54	0.7448
AT1G75700		HVA22G	HVA22-like protein G (.1)		Potri.004G166800 [exp]	23.81	0.6993
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.018G134000 [exp]	28.14	0.6739
AT2G29620			unknown protein		Potri.009G043000 [exp]	113.60	0.5483
					Potri.001G105150 [exp]	159.53	0.5416

Compare expression of checked genes

Potri.016G127800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.