Plant FIBer expression Database

Potri.016G128200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38480 164 / 2e-51 Uncharacterised protein family (UPF0497) (.1)
AT2G36330 76 / 2e-16 Uncharacterised protein family (UPF0497) (.1)
AT5G62820 57 / 1e-09 Uncharacterised protein family (UPF0497) (.1)
AT4G11655 53 / 1e-08 Uncharacterised protein family (UPF0497) (.1)
AT3G55390 46 / 3e-06 Uncharacterised protein family (UPF0497) (.1)
AT5G40300 44 / 3e-05 Uncharacterised protein family (UPF0497) (.1)
AT2G39530 40 / 0.0003 Uncharacterised protein family (UPF0497) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G079800
[exp]
72 / 2e-15 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1)
Potri.015G075100
[exp]
68 / 9e-14 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1)
Potri.008G053500
[exp]
45 / 4e-06 AT3G55390 238 / 6e-81 Uncharacterised protein family (UPF0497) (.1)
Potri.010G207000
[exp]
43 / 4e-05 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012216
[exp]
170 / 2e-53 AT2G38480 170 / 2e-53 Uncharacterised protein family (UPF0497) (.1)
Lus10001266
[exp]
166 / 6e-52 AT2G38480 168 / 8e-53 Uncharacterised protein family (UPF0497) (.1)
Lus10002372
[exp]
65 / 1e-12 AT2G36330 224 / 3e-72 Uncharacterised protein family (UPF0497) (.1)
Lus10042123
[exp]
64 / 4e-12 AT2G36330 228 / 2e-73 Uncharacterised protein family (UPF0497) (.1)
Lus10001709
[exp]
52 / 3e-08 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1)
Lus10005154
[exp]
51 / 8e-08 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1)
Lus10031303
[exp]
39 / 0.0008 AT2G39530 87 / 2e-21 Uncharacterised protein family (UPF0497) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0396 Marvel-like PF04535 DUF588 Domain of unknown function (DUF588)
Representative CDS sequence
>Potri.016G128200.1 pacid=42810120 polypeptide=Potri.016G128200.1.p locus=Potri.016G128200 ID=Potri.016G128200.1.v4.1 annot-version=v4.1
ATGTCAAATTCAGAGCATACACCACCGAAGAAGGACGTAGAATCGCCGGCGACTGACAATACAACACCAGCGGCGGAGACAGGAACGGGGTTTGGTGTGG
CGCCGATTACAAGGAGATGGAGAAGAGAGGACATGTTAAAGAGAGGGTCATTAGCATTGAGAGGATTGGCTTTGTTATTTTCTTTGCTTGCTTTTATCAT
CATGGCCAGTAACAAACATGGAGATTGGAAAGATTTTGATAAATATGAAGAGTACAGGTATTTGTTGGCAATAGCAATACTTTCGACTTTTTATACGGCC
GGGCAAGTGTTAAGACATGTTCAAGAGCTTTCGACTGGGAAACAAATGTTAGAAAAGAGGACTTCTGCCATGTTTGATTTCTTTGGGGATCAGATTGTGG
CCTACCTGTTGGTATCTTCAGCTTCTTCAGCAGTTCCCTTGACAAACAGGATGAGAGAAGGAGCGGATAACATATTTACTGATTCCTCAGCAGCAGCCAT
TAGTATGGGGTTCTTCGCGTTCATATCATTGGCATTATCAGCTCTTATTTCAGGATATAAACTATCAACTCAATCTTACATTTAA
AA sequence
>Potri.016G128200.1 pacid=42810120 polypeptide=Potri.016G128200.1.p locus=Potri.016G128200 ID=Potri.016G128200.1.v4.1 annot-version=v4.1
MSNSEHTPPKKDVESPATDNTTPAAETGTGFGVAPITRRWRREDMLKRGSLALRGLALLFSLLAFIIMASNKHGDWKDFDKYEEYRYLLAIAILSTFYTA
GQVLRHVQELSTGKQMLEKRTSAMFDFFGDQIVAYLLVSSASSAVPLTNRMREGADNIFTDSSAAAISMGFFAFISLALSALISGYKLSTQSYI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G38480 Uncharacterised protein family... Potri.016G128200
[exp]
0 1
AT5G03250 Phototropic-responsive NPH3 fa... Potri.008G038600
[exp]
1.41 0.8320
AT1G69680 Mog1/PsbP/DUF1795-like photosy... Potri.013G049900
[exp]
13.60 0.8415
AT1G25370 Protein of unknown function (D... Potri.010G122700
[exp]
21.49 0.7056
AT3G10040 Trihelix sequence-specific DNA binding ... Potri.016G096300
[exp]
21.74 0.8219
AT4G27470 ATRMA3 RING membrane-anchor 3 (.1) Potri.001G401600
[exp]
22.49 0.8058
AT5G03890 unknown protein Potri.015G005700
[exp]
24.18 0.8318
AT4G35870 early-responsive to dehydratio... Potri.005G108600
[exp]
26.72 0.7617
AT1G78530 Protein kinase superfamily pro... Potri.011G101900
[exp]
27.49 0.8236
Potri.007G057050
[exp]
28.07 0.8268
AT5G62520 SRO5 similar to RCD one 5 (.1.2) Potri.015G076500
[exp]
36.66 0.7929

Potri.016G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.