Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WRKY33.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38470 377 / 5e-125 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G07100 251 / 5e-80 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT4G26640 258 / 2e-78 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 249 / 4e-76 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G30250 240 / 1e-73 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT3G01080 228 / 1e-68 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 231 / 4e-68 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G04880 199 / 3e-57 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G37260 188 / 2e-54 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT4G30935 175 / 2e-48 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105300 [exp] 768 / 0 AT2G38470 341 / 4e-111 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 490 / 4e-168 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 474 / 2e-161 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.001G361600 [exp] 276 / 2e-85 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 262 / 1e-80 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G087900 [exp] 263 / 3e-80 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G086000 [exp] 263 / 1e-78 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.008G091900 [exp] 256 / 1e-78 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 245 / 9e-74 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001265 [exp] 512 / 2e-177 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 501 / 1e-172 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10042243 [exp] 352 / 2e-115 AT5G07100 323 / 5e-105 WRKY DNA-binding protein 26 (.1.2) Lus10032887 [exp] 291 / 2e-89 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 289 / 2e-88 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10026634 [exp] 274 / 7e-86 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 273 / 4e-85 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10016595 [exp] 268 / 4e-82 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10043167 [exp] 266 / 4e-82 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 257 / 2e-79 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.016G128300.1 pacid=42809037 polypeptide=Potri.016G128300.1.p locus=Potri.016G128300 ID=Potri.016G128300.1.v4.1 annot-version=v4.1 ATGGCATCTTCAGCTTCTGCGAGCATATCAAATTCTATGAATTCTCCATCAAACTTTTCTTTCTCGACCCAGTTTATGACTTCTTCTTCCTCTCCTTCTT CTTTTACTAATCTTCTTTCTAGTAATAACAAAGACATGGACAACCTTAGCTGGGGACTTTATGACCATGGAACGAATGATAGAATTGGTATTGAAATCCC AAACTATAAGTCATTTCAACCCTTTTCTCCTCCCCCAGTTTCTCCTTCTTCTTACTTTGCCATTCCTCCTGGTTTAAGCCCAACTGAGCTCTTGGACTCA CCTGTGCTTTTCCCTACTTCTAATGGTCTTGCATCTCCTACAACTGGGGCTTTTGCTGGTCAAACCTTCAACTGGAGGGGTAATTCTAATGACAATCAGC AAGGTGTTAGTGGAGAAGAGAAAAACTACAGTGATTTCTCTTTCCCAACCCAGACAAGGCCTCCTGCAATTTCATCATCCTTCTTTCAATCCTCTTCAAA CAGTGTTACAGTGGAGAAATCCCTGAAAAGGAAACAAGAAGAATGGAACTTTGACCAATTAAAGCAAACTGACTTTTCATCAGATCAGAAAACAGGAGTA AAATCAGAATTTGCACCAGAGCAGAGTTTCTCCTCGGAGTTGGTGCCACTCCAAGCTAACATGCAAAGTGTTAACACTGCTGCTCAACCAAGTTTCAACC AATACAATCAATCAGCTCATTATATGAGAGAGAATAAAAGGTCTGATGATGGATACAACTGGAGAAAATATGGACAAAAGCAAGTGAAAGGGAGTGAGAA TCCAAGGAGTTATTACAAGTGCACATATCCGAATTGCCCAACAAAGAAAAAGGTGGAGAGATCTTTGGATGGACAGATTACTGAAATAGTTTATAAAGGA AGTCACAACCATCCCAAGCTTCAATCCAGCAGAAGATCATCCTCTCAATTAGTTCAGCCTTCTGGAGGTGCCAGCTCAGAAATCTCTGATCAATCAATCG CACCAATAGAGTCTAGCATGATGCAGGAGGACTCTTCGATTTCGCTTGGGGAGGATGAATTTGACCAAAGTTCATCAATGAATTCAGGAGAAGAGGACAA TGCAAATGAACCCGATGCCAAAAGATGGCAGGGACAGAACGAAAACGAGAGTATTTTAGGTGCTGGGAGCAGGACTGTTAGAGAACCTAGAATTGTGGTT CAAACAACAAGTGACATTGACATACTTGATGATGGCTATAGGTGGCGAAAATATGGGCAGAAAGTCGTCAAGGGAAATCCGAATCCAAGGAGCTACTACA AATGCACATCTGTTGGTTGTCCTGTGAGGAAACATGTAGAGCGAGCATCACAGGATTTGAGAGCTGTGATTACAACTTATGAAGGAAAACACAACCATGA TGTTCCAGCCGCCCGCGGCAGCGGCTACATGAACAAAGCTCCATCCATTGCTAACAGTACTGCCAATGCGCCGATCCCTATAAGGCCTTCCGTCATGGCC AATCATTCTAACCAGACAAGTTATCCAAACTCCCTTCACAGCACAAGATCATTACCAGCATCAGGAAGTCAAGCACCATTTACCCTCGAAATGTTACAGG GTCAAGGGAGTTTTGAATACTCAAGTTTTGGAAAGCAGAATGGCACCTACATGAATCAAACACAATACTCCGAGGGTGTCTTCCCTAGAGCCAAGGAAGA ACCAAAGAATGACTCATTTTTTGATCCCTTCCTTAACTAA
AA sequence Show only first row Show all	>Potri.016G128300.1 pacid=42809037 polypeptide=Potri.016G128300.1.p locus=Potri.016G128300 ID=Potri.016G128300.1.v4.1 annot-version=v4.1 MASSASASISNSMNSPSNFSFSTQFMTSSSSPSSFTNLLSSNNKDMDNLSWGLYDHGTNDRIGIEIPNYKSFQPFSPPPVSPSSYFAIPPGLSPTELLDS PVLFPTSNGLASPTTGAFAGQTFNWRGNSNDNQQGVSGEEKNYSDFSFPTQTRPPAISSSFFQSSSNSVTVEKSLKRKQEEWNFDQLKQTDFSSDQKTGV KSEFAPEQSFSSELVPLQANMQSVNTAAQPSFNQYNQSAHYMRENKRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKG SHNHPKLQSSRRSSSQLVQPSGGASSEISDQSIAPIESSMMQEDSSISLGEDEFDQSSSMNSGEEDNANEPDAKRWQGQNENESILGAGSRTVREPRIVV QTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGYMNKAPSIANSTANAPIPIRPSVMA NHSNQTSYPNSLHSTRSLPASGSQAPFTLEMLQGQGSFEYSSFGKQNGTYMNQTQYSEGVFPRAKEEPKNDSFFDPFLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.016G128300 [exp]	0	1	WRKY33.1
AT1G24140			Matrixin family protein (.1)		Potri.015G103900 [exp]	1.00	0.9607
AT5G35735			Auxin-responsive family protei...		Potri.002G222700 [exp]	2.44	0.9427
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Potri.003G138600 [exp]	2.82	0.9253	Pt-WRKY53.1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.013G153400 [exp]	4.89	0.9287
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	5.29	0.9197
AT4G12731			unknown protein		Potri.001G226750 [exp]	5.47	0.9250
AT4G12731			unknown protein		Potri.001G226650 [exp]	6.32	0.9253
AT5G39670			Calcium-binding EF-hand family...		Potri.004G122900 [exp]	6.70	0.9145
AT1G43910			P-loop containing nucleoside t...		Potri.005G119200 [exp]	6.92	0.8974
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.004G117800 [exp]	7.54	0.8947

Compare expression of checked genes

Potri.016G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.