Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01720 712 / 0 RNI-like superfamily protein (.1) AT5G27920 357 / 2e-114 F-box family protein (.1) AT4G15475 155 / 8e-40 F-box/RNI-like superfamily protein (.1) AT5G25350 141 / 3e-35 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 109 / 7e-25 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 94 / 2e-20 RNI-like superfamily protein (.1) AT1G80570 89 / 3e-18 RNI-like superfamily protein (.1.2.3) AT1G21410 87 / 3e-18 SKP2A F-box/RNI-like superfamily protein (.1) AT3G58530 86 / 1e-17 RNI-like superfamily protein (.1) AT1G77000 83 / 6e-17 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105400 [exp] 1076 / 0 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 778 / 0 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 377 / 4e-122 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 353 / 5e-113 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G254100 [exp] 132 / 4e-32 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 120 / 4e-28 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 112 / 9e-26 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 112 / 1e-25 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 100 / 2e-22 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001264 [exp] 952 / 0 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 895 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 274 / 1e-84 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10012764 [exp] 160 / 1e-40 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 126 / 1e-29 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10030102 [exp] 120 / 3e-28 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 117 / 3e-27 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 116 / 8e-27 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 112 / 2e-25 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10013444 [exp] 101 / 1e-22 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.016G128400.1 pacid=42810234 polypeptide=Potri.016G128400.1.p locus=Potri.016G128400 ID=Potri.016G128400.1.v4.1 annot-version=v4.1 ATGAAGAGACAAAAGACCTTAGAAACCAACGCCAACAACAGCAACCTGTTTGATCTCTTGTCTGAAGAGATAGTTTTTACAATCTTAGACTTCATCGACA CAAACTCTTTAGACAGAAAGTCTTTTTCTTTAGTTTGCAAGTCATTTTACATTACAGAATCAAAACACCGCAAAAATCTTAAGCCTTTAAGACAAGAACT CCTTCCAAGAGTCCTTAACAGATACCCACATGTAAACCATCTTGATCTTTCTTTATGTCCACGTATAAATGACAATTCTTTGAATGTAATATCAAACACC TGCAAAGATTCATTGAATTCTATTGATCTTTCAAGGTCAAGGTTCTTTTCTTATAATGGGTTGATGAGTTTGGCTTCGAATTGTAAGAATTTGGTGAGTA TTGACTTGTCTAATGCCACTGAGTTGAGAGATGCTGCGGCGGCTGCGGTGGCGGAAGTTAAGAATTTGGAGAGGTTGTGGTTGGGGAGGTGTAAGTTGAT TACTGATATGGGAATTGGATGCATTGCTGTTGGTTGCAAGAAGTTGAGGTTGATTAGCTTGAAGTGGTGTATAGGTGTTAGTGATTTAGGTGTTGGTTTA ATTGCTGTTAAGTGCAAGGAGATTAGAAGTTTGGATCTTTCTTACTTGCCCATTACAAATAAATGCTTACCGTCCATTTTGAAACTACAACATCTTGAAG ATATAGTTCTAGAAGGATGCTTTGGTATAGATGATGATAGCCTTGCTGCTCTCAAACATGGCTGCAAGTCCATGAAGGCACTCGATATATCAAGTTGTCA GCACATCAGTCATGTTGGCCTGTCTTCCTTAATAAGTGGCGCTGGAAGCCTACAGCAACTCACCCTGTCATATAGCTGTCCTGTCACCCTAGCTCTGGCT AATAGTTTGAAAAGGCTTTCCATGTTGCAATCTGTCAAGCTAGATGGTTGTGCGGTTACCTCTGCTGGACTGACAGCCATTGGCAATTGGTGCATAACAC TAAGTGAGCTGAGCCTGAGTAAATGTGTAGGAGTGACAGATGAAGGTCTCTCTTCTCTTGTAACAAAGCACAAAGACTTGAAGAAGCTAGATATAACATG CTGTCGGAAGATAACTGATGTTTCTATCGCCTACATCACAAATTCATGCACCAATCTCACTTCCCTGAGAATGGAGTCATGTACCTTAGTTCCTAGTGAA GCATTTGTCTTGATTGGACAGCGATGTCAGTTTCTTGAAGAGCTTGATTTAACAGATAATGAGATTGATGATGAAGGTCTGAAGTCCATTTCTAGATGTT CTAAACTCTCCAGCTTAAAATTAGGAATTTGCCTAAACATAAGTGACGAGGGGCTTTCACATGTTGGCATGAAGTGCTCAAAACTTACTGAGCTTGATTT GTACAGGTCTGCTGGAATAACAGATTTGGGCATTCTGGCAATTTCTCGAGGTTGCCCTGGGCTTGAGATGATCAATATGTCATATTGTATTGACATTACT GATAGTTCCTTACTATCACTTTCAAAATGCTCAAGGTTAAACACATTCGAAAGTCGAGGGTGCCCTCTTATCACATCTCTAGGTCTTGCAGCCATTGCTG TGGGGTGCAAGCAGCTCATTAAGCTAGACATAAAGAAGTGTCACAACATTGGTGATGCTGCAATGCTTCCACTTGCACACTTCTCTCAGAACCTCAGACA GATTACTTTATCATATAGCTTAGTTACTGATGTGGGGCTCTTGGCCCTTGCCAGCATCAGCTGCCTGCAGAGCATGACGGTCCTGCACTTGAAGGGCTTG ACTCCAAGTGGATTGGCAGCTGCCTTGTTGGCATGTGGAGGCTTAACAAAAGTGAAGCTCCATTTGTCTTTTAAATCATTGCTTCCACTGCCTCTTTTTG AACATTTGGAAGCACGTGGTTGTGTGTTTGAGTGGAGAGATAAAGAGTTTCAGGCTGAATTAGATCCGAAGTGTTACAAGTTACAGTGGGAAGATATAGC TCAATAG
AA sequence Show only first row Show all	>Potri.016G128400.1 pacid=42810234 polypeptide=Potri.016G128400.1.p locus=Potri.016G128400 ID=Potri.016G128400.1.v4.1 annot-version=v4.1 MKRQKTLETNANNSNLFDLLSEEIVFTILDFIDTNSLDRKSFSLVCKSFYITESKHRKNLKPLRQELLPRVLNRYPHVNHLDLSLCPRINDNSLNVISNT CKDSLNSIDLSRSRFFSYNGLMSLASNCKNLVSIDLSNATELRDAAAAAVAEVKNLERLWLGRCKLITDMGIGCIAVGCKKLRLISLKWCIGVSDLGVGL IAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDIVLEGCFGIDDDSLAALKHGCKSMKALDISSCQHISHVGLSSLISGAGSLQQLTLSYSCPVTLALA NSLKRLSMLQSVKLDGCAVTSAGLTAIGNWCITLSELSLSKCVGVTDEGLSSLVTKHKDLKKLDITCCRKITDVSIAYITNSCTNLTSLRMESCTLVPSE AFVLIGQRCQFLEELDLTDNEIDDEGLKSISRCSKLSSLKLGICLNISDEGLSHVGMKCSKLTELDLYRSAGITDLGILAISRGCPGLEMINMSYCIDIT DSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKKCHNIGDAAMLPLAHFSQNLRQITLSYSLVTDVGLLALASISCLQSMTVLHLKGL TPSGLAAALLACGGLTKVKLHLSFKSLLPLPLFEHLEARGCVFEWRDKEFQAELDPKCYKLQWEDIAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01720			RNI-like superfamily protein (...		Potri.016G128400 [exp]	0	1
AT3G45240		ATSNAK2, GRIK1	geminivirus rep interacting ki...		Potri.001G010700 [exp]	2.23	0.8405
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	4.89	0.8379	DAO.3
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014000 [exp]	10.09	0.8316
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	11.22	0.8162	ATCSLE1.1
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Potri.002G054100 [exp]	11.95	0.8073
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	14.69	0.8241
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	15.87	0.8075	GL2.1
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	16.49	0.8126	ILR1.1
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	22.44	0.7972
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	22.58	0.8081	KUP6.2

Compare expression of checked genes

Potri.016G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.