Plant FIBer expression Database

Potri.016G128500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03570 587 / 0 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
AT2G38460 575 / 0 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1)
AT5G26820 89 / 1e-18 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G128600
[exp]
783 / 0 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
Potri.005G012900
[exp]
77 / 1e-14 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001263
[exp]
654 / 0 AT2G38460 602 / 0.0 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1)
Lus10012214
[exp]
563 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Lus10010912
[exp]
59 / 7e-09 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10031421
[exp]
56 / 6e-08 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10020698
[exp]
54 / 2e-07 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10029841
[exp]
44 / 0.0003 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF06963 FPN1 Ferroportin1 (FPN1)
Representative CDS sequence
>Potri.016G128500.1 pacid=42809342 polypeptide=Potri.016G128500.1.p locus=Potri.016G128500 ID=Potri.016G128500.1.v4.1 annot-version=v4.1
ATGGTGAGAGAGCCACGTCTTGATCAACAGCAACAACAAGAATCTTCTTCTTCCCAAGACTCTTCTTTGCCTACATCCCTTATCAGAATTTTGTATATTG
GCCACTTTTTAGCAAGATGGGATGCCAGAATGTGGGAATTCTCGGTTGGTTTATACATGATCACTCTTTGGCCGGATTCTTTAATCCTTCCTGCTATTTA
TGGTGCCATTGAATGTGCTTCTACTGCATTGTTTGGTCCCATCATCGGACAATGGGTGCAGAGGTCGGCATATTTTAAGGTTCTCCGAATTTGGTTGGTG
ACCCAGAATTTTTCCTTCATAATAGCTGGATGCACGGTAATCACATTACTGTTCTCTCCGGCATTGAAGTCGACAAATTTCACAGTATTCATTTTGCTTG
TGATATTAACCAACATCTCTGGAGCTATTGGTGTGCTTTCCACTCTTGCCGGTACCATCTTAATAGAAAGAGAATGGGTGGTGTTGATTTCAGAAGGCCA
TACGCCTGATGTACTAACAAAGATCAACTCAACTATTAGACGAATTGATTTAACCTGCAAGCTTCTTGCTCCTGTTATCAGTGGCTTCATAATGAGCTTT
ATATCAGTTAAAGCCTCTGCTATGACTTTAGCAGTCTGGAACACTGTAGCAGTGTGGCTGGAATATTGGCTTTTCACATCTGTATATACTGGCATTCCAG
CTTTAGCTGAAAGCAGCCAAAGGAGGATTTCGCGACTTTCACCAAGTGATACGGTAGAGATGGCATCTACTCCTGCAGAGAGAGCAGGCTTGATTTCTCA
AAGCGATGAAATTTCAGTTTCAGTGGAAATTGGATGGAGAAGGAGATTAACTGATTGGTTTTCAAAAACCCCTTTTGTTGGTGCTTGGAGTGTGTATTCT
CAGCAAGATGTTGTGCTCCCTGGAGTAGCTCTGGCTTTGTTATACTTCACAGTCCTCAGCTTTGGCACCTTGATGACAGCCACTTTGGAATGGAAAGGTA
TACCTGCATTTGTGATTGGAATAGCTCGTGGAATAAGCGCAATAATTGGCATGGCTGCAACAGTTTTGTACCCAATTTTACAATCTCATGTCTCAACTCT
CAGACCAGGATTGTGGGCAATCTGGTCTCAGTGGACCTGCCTTCTTGTATGTGTTGCTTCAATAGTGGTCCAAAATCATCTTTTATCGGCATACATGCTG
ATGGCTGGAGTAGCAACATCTCGACTGGGTTTATGGATGTTTGACTTATCTGTAATTCAACAAATGCAGGATCAAGTTCCTGAATCTGATCGCTGTGTTG
TTGGAGGTGTTCAAAACTCTCTCCAATCTACTATGGACATGTTGGGTTATATCATGGGCATGATCATCTCCAACCCTCAGGATTTCTGGGAGTTGATTCT
GTTGTCCTTTTCGGCAGTAACATTTGCTGCATTGCTCTATAGCATACATCTTTATCGAGTTCGGAAACACCTCTTTCACTTTGAGAAATCGTTCGTGTTG
CTAGATTGGGTAATCAGATCATCACCTGAAGATTTACTGTAA
AA sequence
>Potri.016G128500.1 pacid=42809342 polypeptide=Potri.016G128500.1.p locus=Potri.016G128500 ID=Potri.016G128500.1.v4.1 annot-version=v4.1
MVREPRLDQQQQQESSSSQDSSLPTSLIRILYIGHFLARWDARMWEFSVGLYMITLWPDSLILPAIYGAIECASTALFGPIIGQWVQRSAYFKVLRIWLV
TQNFSFIIAGCTVITLLFSPALKSTNFTVFILLVILTNISGAIGVLSTLAGTILIEREWVVLISEGHTPDVLTKINSTIRRIDLTCKLLAPVISGFIMSF
ISVKASAMTLAVWNTVAVWLEYWLFTSVYTGIPALAESSQRRISRLSPSDTVEMASTPAERAGLISQSDEISVSVEIGWRRRLTDWFSKTPFVGAWSVYS
QQDVVLPGVALALLYFTVLSFGTLMTATLEWKGIPAFVIGIARGISAIIGMAATVLYPILQSHVSTLRPGLWAIWSQWTCLLVCVASIVVQNHLLSAYML
MAGVATSRLGLWMFDLSVIQQMQDQVPESDRCVVGGVQNSLQSTMDMLGYIMGMIISNPQDFWELILLSFSAVTFAALLYSIHLYRVRKHLFHFEKSFVL
LDWVIRSSPEDLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G03570 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THA... Potri.016G128500
[exp]
0 1
Potri.008G195300
[exp]
2.00 0.7978
AT2G20180 bHLH PIF1, PIL5, bHL... PHY-INTERACTING FACTOR 1, phyt... Potri.002G252800
[exp]
6.55 0.8124 Pt-PIL5.1
AT2G45850 AT-hook AT hook motif DNA-binding fami... Potri.002G158200
[exp]
10.72 0.7282
AT5G24060 Pentatricopeptide repeat (PPR)... Potri.004G072400
[exp]
12.24 0.7973
AT5G48960 HAD-superfamily hydrolase, sub... Potri.008G205900
[exp]
12.32 0.7934
AT5G49760 Leucine-rich repeat protein ki... Potri.003G046450
[exp]
20.97 0.7736
AT5G39940 FAD/NAD(P)-binding oxidoreduct... Potri.004G130000
[exp]
32.09 0.6681
AT4G23420 NAD(P)-binding Rossmann-fold s... Potri.012G143800
[exp]
35.88 0.6391
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
40.39 0.6682
AT5G36930 Disease resistance protein (TI... Potri.011G012750
[exp]
42.49 0.7374

Potri.016G128500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.