Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03570 610 / 0 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) AT2G38460 605 / 0 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) AT5G26820 110 / 2e-25 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128500 [exp] 779 / 0 AT5G03570 588 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.005G012900 [exp] 92 / 2e-19 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001263 [exp] 649 / 0 AT2G38460 602 / 0.0 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) Lus10012214 [exp] 545 / 0 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10031421 [exp] 76 / 4e-14 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10010912 [exp] 74 / 2e-13 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10029841 [exp] 73 / 2e-13 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10020698 [exp] 69 / 7e-12 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06963 [poplar] [flax] FPN1 Ferroportin1 (FPN1)
Representative CDS sequence Show only first row Show all	>Potri.016G128600.1 pacid=42810485 polypeptide=Potri.016G128600.1.p locus=Potri.016G128600 ID=Potri.016G128600.1.v4.1 annot-version=v4.1 ATGGTGGGAGAGTCACTTCTTGATCAACAACAGCAAGAACCATCTTCTTCCAAAGATTCTTCTTTGCCCACATCTCTTATCAGAAAATTGTACATTGGCT ACTTCTTAGCAAGATGGGATGCCAGAATGTGGGAATTCTCTGTGGGTTTATACATGATCACTCTTTGGCCAGACTCCTTAATCCTTCCTGCTATTTATGG TGCTATTGAATCTGCTTCTATTGCATTTTTGGGTCCCATCATTGGACAATGGGTGGAGAAGTTGACATACATTAAGGTTCTCCGAATTTGGTTGGTGACC CAGAATCTCTCCTTTATAATAGCTGGATGCACAGTAATTGCCTTACTGTTCTATCCAGACTTGAAGTCGACAAATTTCACAGCATTCATCTTACTTGTGA TATTAACCAACCTCTCTGGAGCTGTTGGGGTGCTTTCCACTCTTGCCGGCACCATCTTAATAGAAAGAGAATGGGTGGTGGTGATATCAGAAGGCCATCC ACCTGGTGTTCTAACGAGGATTAATTCGATTATTAGACGAATTGATTTAACCTGCAAGCTTCTTGCTCCTGTTATAAGTGGCTTCATCATGAGCTTTGTA TCAGTTAAAGCCTCTGCTATGACTTTAGCAATCTGGAACACTATAGCAGTGTGGCTAGAATATTGGCTTTTCACATCTGTACATAATGGCATTCCAGCTT TAACTGAAAGTAGCCAAAGGAGGATTTCACGACTTTCACGAAGTGATATGGAAGAGATCACGTCTATTTCTCCAGAAAGAGAGGGCTTGATTTCTCCAGG AAGCGAAAATTCGGTTTCGGTGGATTTGGGATGGAGAAGGAGATTAACTCAGAGCTTTTCAAAGGTTCCTTTTGTCGGTGCTTGGCTTGTGTATTTACAG CAAGATGTTCTGCTCCCTGGTGTATCTCTGGCCTTGTTATATTTCACAGTGCTTAGCTTTGGCACCTTGATGACAGCTGCCTTGGAATGGGAAGGTATAC CTGCATATGTGATCGGAATAGCCCGTGGAATAAGCGCTATGATTGGAATAGCCGCGACGGTTGTGTACCCAATCTTGCAATCTCGTATTTCAATTCTCAG AACAGGACTCTGGTCAATCTGGTCTCAGTGGACCTGCCTTCTAGTGTGCATTGCTTCAATATGGGTCCAAAATCATCTTTTATCAGCATACATGCTGATG GCTGGAGTAGCTATCTCTAGGCTTGGCTTATGGATGTTTGACTTATCTGTAATCCAACAAATGCAGGATCAAGTTCCCGAGCCTGATCGTCTGGTTGTGG GAGGTGTTCAGAATTCTGTTCAGTCTTTTATGGACTTGTTGGGTTATGTTATGGGCATAATCATCTCCAACCCTCGGGATTTCTGGGAGTTGATCATATT GTCCTTTTCAGCAGTAACAGTTGCTGCATTGCTTTACAGCATACATCTATATCGAGTTAGAAAGCACCTTTTTCACTTTGAGAAGCTGTTCATGTTGGTG AAATGGGAGATCTTGTCACCTTCGCATCAAAATTTACTGGAACCAAATATTCCTAGGTAG
AA sequence Show only first row Show all	>Potri.016G128600.1 pacid=42810485 polypeptide=Potri.016G128600.1.p locus=Potri.016G128600 ID=Potri.016G128600.1.v4.1 annot-version=v4.1 MVGESLLDQQQQEPSSSKDSSLPTSLIRKLYIGYFLARWDARMWEFSVGLYMITLWPDSLILPAIYGAIESASIAFLGPIIGQWVEKLTYIKVLRIWLVT QNLSFIIAGCTVIALLFYPDLKSTNFTAFILLVILTNLSGAVGVLSTLAGTILIEREWVVVISEGHPPGVLTRINSIIRRIDLTCKLLAPVISGFIMSFV SVKASAMTLAIWNTIAVWLEYWLFTSVHNGIPALTESSQRRISRLSRSDMEEITSISPEREGLISPGSENSVSVDLGWRRRLTQSFSKVPFVGAWLVYLQ QDVLLPGVSLALLYFTVLSFGTLMTAALEWEGIPAYVIGIARGISAMIGIAATVVYPILQSRISILRTGLWSIWSQWTCLLVCIASIWVQNHLLSAYMLM AGVAISRLGLWMFDLSVIQQMQDQVPEPDRLVVGGVQNSVQSFMDLLGYVMGIIISNPRDFWELIILSFSAVTVAALLYSIHLYRVRKHLFHFEKLFMLV KWEILSPSHQNLLEPNIPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03570		FPN2, ATIREG2	FERROPORTIN 2, ARABIDOPSIS THA...		Potri.016G128600 [exp]	0	1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.002G159500 [exp]	1.73	0.8844
AT1G13480			Protein of unknown function (D...		Potri.010G133500 [exp]	4.47	0.8654
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.017G069300 [exp]	5.56	0.8169
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	6.00	0.8823
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G014350 [exp]	6.32	0.8709
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.016G133200 [exp]	7.41	0.8370
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Potri.003G104000 [exp]	8.12	0.8603
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.005G189800 [exp]	8.94	0.8376
AT3G04870		SPC1, PDE181, Z...	SPONTANEOUS CELL DEATH 1, PIGM...		Potri.013G037700 [exp]	10.95	0.8837
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	11.66	0.8458	Pt-IFS1.53

Compare expression of checked genes

Potri.016G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.