Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08820 813 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 563 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 535 / 0 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 532 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 514 / 4e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 513 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 504 / 8e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 498 / 3e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 500 / 5e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 502 / 2e-167 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105700 [exp] 1220 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 589 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 588 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 582 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 572 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 561 / 0 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 545 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 536 / 0 AT3G22690 582 / 0.0 unknown protein Potri.005G012600 [exp] 527 / 7e-180 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029436 [exp] 993 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 574 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 553 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 546 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 535 / 0 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 515 / 6e-175 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029793 [exp] 508 / 2e-172 AT1G04840 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 512 / 2e-171 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10013991 [exp] 514 / 6e-171 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 509 / 1e-170 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.016G128900.3 pacid=42810507 polypeptide=Potri.016G128900.3.p locus=Potri.016G128900 ID=Potri.016G128900.3.v4.1 annot-version=v4.1 ATGTCTTCCTTAATCGTCACAAAATCAGCAGGCATCAAGAACCGCCTCATTCAAGGCTTCAGCTGTCTCAAACACCTAAAACACATCCACGCAGCCCTTC TCCGTCTCGGCCTCGATGAAGACACTTACCTCCTTAACAAGGTCTTACGTTTCAGCTTCAACTTTGGAAACACGAACTATTCCTTTCGCATATTAGATCA AACGAAAGAACCCAACATTTTCCTTTTCAATACAATGATTCGTGGCTTAGTTTTGAACGATTGTTTTCAAGAATCCATTGAGATTTACCACTCTATGAGG AAAGAAGGGCTTTCTCCTGATAGTTTTACTTTCCCTTTTGTCTTGAAAGCGTGCGCGAGGGTTTTGGATTCTGAGTTGGGTGTCAAGATGCATAGCCTTG TGGTGAAAGCAGGTTGTGAAGCGGATGCGTTCGTTAAGATAAGTTTGATTAATCTGTATACGAAATGTGGGTTTATAGATAATGCATTTAAGGTGTTTGA TGATATTCCTGACAAGAATTTTGCGTCGTGGACGGCGACAATAAGTGGGTATGTTGGTGTTGGGAAATGTAGGGAGGCGATTGATATGTTTCGTAGGTTG TTGGAGATGGGTTTGAGGCCGGATAGTTTTAGTCTTGTTGAAGTTTTGTCTGCTTGCAAGCGAACTGGGGATTTGAGAAGTGGGGAGTGGATTGATGAGT ATATAACGGAGAATGGCATGGTAAGGAATGTGTTTGTGGCTACTGCTTTGGTGGATTTTTATGGCAAATGTGGAAACATGGAGAGAGCGCGTAGCGTCTT TGATGGGATGCTGGAGAAGAATATTGTTTCTTGGAGTTCTATGATTCAGGGTTATGCTTCTAATGGGTTGCCTAAAGAAGCTTTAGACCTCTTTTTTAAA ATGTTGAATGAGGGTTTGAAACCTGATTGTTATGCTATGGTGGGAGTTCTTTGTTCTTGTGCGAGGTTAGGGGCGCTAGAATTAGGGGACTGGGCTAGCA ATTTGATCAATGGAAATGAGTTCTTGGATAATTCTGTCTTGGGTACGGCATTGATTGACATGTATGCAAAATGTGGGAGAATGGATAGAGCCTGGGAAGT TTTTAGGGGGATGAGGAAGAAAGATAGAGTAGTTTGGAATGCAGCTATATCAGGTCTTGCCATGAGCGGACATGTGAAAGATGCATTAGGGCTTTTTGGC CAAATGGAGAAGTCTGGGATCAAGCCAGACAGGAACACTTTTGTTGGCTTACTTTGTGCTTGTACTCATGCTGGTCTAGTTGAAGAGGGTCGTCGATATT TCAATAGTATGGAGTGTGTTTTTACCTTGACTCCAGAAATTGAACACTATGGATGCATGGTGGATCTTCTTGGTCGTGCAGGTTGCTTAGATGAAGCTCA TCAGCTTATCAAAAGTATGCCAATGGAAGCCAATGCTATTGTTTGGGGAGCATTGCTGGGTGGATGCAGGCTGCATAGAGACACCCAATTGGTGGAAGTC GTGCTGAAAAAACTCATAGCATTAGAACCGTGGCACTCAGGTAATTATGTTCTTTTGTCAAATATATATGCAGCAAGTCACAAATGGGAAGAAGCAGCAA AGATTAGGTCAATCATGAGTGAGAGGGGGGTTAAGAAAATACCAGGGTATAGTTGGATTGAAGTGGATGGAGTTGTTCATCAATTCCTTGTGGGGGATAC GTCCCATCCCTTATCAGAGAAGATATATGCAAAACTTGGTGAATTGGCCAAGGACTTAAAAGCTGCAGGTTATGTTCCCACGACAGATCATGTGCTGTTT GACATAGAAGAAGAAGAGAAGGAGCATTTCATTGGTTGTCACAGCGAGAAGCTGGCTGTTGCCTTTGGTTTGATAAGCACAGCTCCAAATGACAAAATTC TTGTTGTGAAAAACCTTCGTGTTTGTGGTGATTGTCATGAGGCAATAAAGCACATTTCTAGAATTGCAGGTAGAGAGATAATTGTGAGAGATAACAATCG ATTCCATTGCTTTACTGATGGTTTGTGTTCGTGTAAAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.016G128900.3 pacid=42810507 polypeptide=Potri.016G128900.3.p locus=Potri.016G128900 ID=Potri.016G128900.3.v4.1 annot-version=v4.1 MSSLIVTKSAGIKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMR KEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRL LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFK MLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEV VLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLF DIEEEEKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	0	1
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	2.64	0.8429
AT2G39580			unknown protein		Potri.008G052500 [exp]	3.46	0.8418
AT1G77800			PHD finger family protein (.1....		Potri.005G171800 [exp]	7.21	0.8351
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	7.74	0.8305
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	8.36	0.8181
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	10.95	0.8272
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	12.00	0.8198
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	12.44	0.7946
AT1G13810			Restriction endonuclease, type...		Potri.008G039800 [exp]	13.74	0.8247
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	14.83	0.8210

Compare expression of checked genes

Potri.016G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.