Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38440 444 / 2e-130 ITB1, DIS3, SCAR2, WAVE4, ATSCAR2 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) AT5G01730 338 / 4e-96 ATSCAR4, WAVE3 SCAR family protein 4 (.1) AT2G34150 209 / 2e-55 ATSCAR1, WAVE1, ATRANGAP2 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2) AT1G29170 206 / 6e-54 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) AT4G18600 194 / 3e-49 SCARL, ATSCAR-LIKE, WAVE5 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 5, SCAR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105800 [exp] 1224 / 0 AT2G38440 427 / 2e-126 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Potri.004G057100 [exp] 226 / 1e-59 AT1G29170 447 / 3e-139 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Potri.011G066100 [exp] 207 / 8e-54 AT1G29170 485 / 7e-154 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022757 [exp] 558 / 6e-171 AT2G38440 431 / 1e-127 IRREGULAR TRICHOME BRANCH1, SCAR homolog 2 (.1) Lus10029437 [exp] 521 / 2e-155 AT5G01730 410 / 6e-119 SCAR family protein 4 (.1) Lus10001897 [exp] 234 / 7e-62 AT1G29170 305 / 1e-88 WASP \(WISKOTT-ALDRICH SYNDROME PROTEIN\)-FAMILY VERPROLIN HOMOLOGOUS PROTEIN 2, SCAR family protein (.1.2.3) Lus10013904 [exp] 234 / 7e-62 AT2G34150 300 / 6e-87 WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1, SCAR family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.016G129000.2 pacid=42809885 polypeptide=Potri.016G129000.2.p locus=Potri.016G129000 ID=Potri.016G129000.2.v4.1 annot-version=v4.1 ATGCCGTTGACGAGATACCAGATAAGGAACGAGTATAGTTTAGCCGATCCAGAGCTGTACAAGGCTGCTGATAAAGATGATCCAGAAGCGCTTTTGGAAG GTGTCGCCATGGCTGGCCTCGTCGGCGTCTTGCGCCAGCTCGGTGACCTCGCCGAGTTCGCTGCTGAGATATTTCATGGACTGCATGAAGAAGTTATGAC AACTGCAGCAAGAGGCCATGGGCTGATGGCTCGGGTACAACAGCTCGAGGCAGAATTTCCTTCAATCGAGAAGGCATTTCTCTCCCAAACTAATCATTCA CCATTCTTTTCCAGCTCAGGTGTTGACTGTCATCCTAATTTGCAAATGGAGCAGAATCTAATTGCTCGTGGAGACTTACCTCGCTTTGTAATGGACTCTT ATGAAGAATGCCGTGGCCCACCACAGTTATTCCTCTTGGACAAGTTTGATGTTGCTGGGGCTGGGGCATGTTTGATGCGTTATACTGATCCATCATTCTT TAAAGTTGAAACAGCATCTTCTGGAATAGCAACTGTAGAGGTTCAGAGGGAGAAGAAAATTCGAAAAAAGAAGAAAGGATCACGGTATAGAAATGGAGAA ACTCCTGAAGTTGTACAAACATCACACACCAAATTGCATGAGTTGTTGTTACAGGAACATTTTGAGAATGGTCATTCTGACCCTGCACGGCTAGTGAAAT TGAAGAGAAGGCAGATAAATGGATCTCCATTTGATCTGAAACCTGGGAAAAGTTACATGGAGAAATTTGTGCTCACTCCTTCACCAGAGCGTAAACAAGT TTGTGAAGATTCTGTCACTCGATCACCTTTGAAATTTACGTTGGATAATTCTAGTGAATCAGGCTATGAAATACATGAGGTCAGTGTGGTAAGTCCTGCA AAAAAGTCATTAAATGGAGTCGAAAGCACATCTTCATCACCCAGTGAACAAGAGGCCATGCTTAAACCTGTTAAGGATGAGTTGGATGGGGAGGCTGTTG ATCGTGGAATTATTAAGGTACTTGACCCAATTGTTGATCGCGGGATGGATGAATTGCCTCCAACCGTCTATAAGATGGCTATTGAAGAGGAATTATTAGT TGATGCAGATATAAAAAGAGAGGGCACTGTAGATGGGGATCATTCTGATGATATGGCAAGTGAAGTGGACAACTACATGGATGCCCTTACTACCATGGAT TCTGAAATGGAAACAGACAATGAGTATAAAGCTAAAAATGCTCCGGACTTCATCAATCTGAGGATACAAGGTGCAGATTCTGATGCAAATGAGGAGCAGC TGGGTTTTCAAGCTAATTCTTCAGATTCTCAATCTATTGGAAACTCTTCTCTGTCTGAGGGTGGGAACAGTTTGTTTAAGAAAGGAACTTCTAGCTCTTC TTACTCCGAGACTCTCTACAATTTGGTTGAGAATACAGCATCTGATGGTGAAGGATCAGGTAAATGGTTCCCTTCTGCCACTTCTACTGAAAACCATGCA ACAAATGTTACTGATCTGCCATCAGATCATCCACCTGTATATGCGGAGACTGGCATAACCGAATCTCATCACCTTGTAACATTCAATGATACAAGGGAAG ACAAAATCCCTGATCCTGTTGAAGCTTCTTGTAGTTCTTGTCCTACAGATTCGAATCCTGTCTTCCTGCATTCAGTTCCTGTTGCACGTTCCATGGTAAG CCCCTTGTCAGGACCTGAATTAGTCGAGGCATCCTCTGGCAGTACTGAACTTGGCTCCAAATCACCGCACTGTGAAAGAAATGGGTTATACCCGACTGAT TCTTTCATTGCTTTAACTGACATCCCTTCACAGATGGGGCATGATGCTTCACTTCCAGATTCTTCTAAAAGTCATTCTGTGGATGTGTTAGATCATGAAG ATCCAGACATGTTAACTGATGCTGTTGTGCATGTGTCGAACATGTCAGATCTGGCTTCTGAAAAGAAAGTCAGTGATGATTCTGTGAATGAAGTGCTTCT AACAGATTGTGCAGCTGAACATTCAACTTTGACACCAGCAGAGGAGCAATTTCCTCACTCAGCTTTGCCTGTAGTGGAGTTGGATGCTGGTGTCCCATCT CTGCCTGATAATTCAAATGTTGTGAAGCCTGATGGTTTGGTTTCTAAAGCAGATGATGAAATTTTAACGAGGGAAGGGAGCACAGAAATTTCAACACCAG TGGTGGATACTTCAGAGTCTGAGTGCATTAACGAGCATCAATTCTCTGATGTAACAGTAGATGCTTCACAAGAGGAACTTGACTCAACAAAATTAAGACT CCCATGTTCTGAAGAGAATGTGAAACTTGAAGAAATTTCTGAGGGTCCAGATGCTGAGGAAAAGAATGCTTCCACGAAGAAAGTGGATATTACAAGAGGA GATGCTACTTATTTCGAACATGAATCATGTAGTTCAGATAAACCAACTCCTGAAGATCATGTAAATTTGGCTGATGATGTAACTGAAACTGTTAAAGCAG AAGATATGGCTGTATCAACTGCTGCTACAAGTGGTGTAGATGCTGAGGAAAAGAATGCCTTCACGAAGAAAGTGGATATTACAAGAGGAGATGCTACTTA TTTCGAACATGAATCATGTAGTTCAGATAAATCAACTCCTGAAGATCATGTAAATTTGGCTGATGATGTAACTGAAACTGTTCAAGCAGAAGAGATGGCT GTATCAACTGCTGCTACAAGTGGTGTAGATGCTGAGGAAAAGAATGCATTCACGAAGAAAGTGGATATTACAAGAGGAGATGCTACTTCTTTCGAACATG AATCATGTAGTTCAGATAAACCAACTCCTGAAGATCATGTAAATTTGGCTGATGATGTAACTGAAACTGTTAAAGCAGAAGATATGGCTGTATCAACTGC TGCTACAAGTGGTGTAGATGCCGAGGAAAAGAATGCCTTCACGAAGAAAGTGGATATTACAAGAGGAGATGCTACTTCTTTCGAAGATGAATCATGTTCA GATAAACCAACTCCTGAAGATCATGTAAATTTGGCTGATGCTGTAACTGAAACTGTTAAAGCAGAAGATATGGCTGTATCAACTGCTGCTACAAGTGGTG TAGATGCCGAGGAAAAGAATGCATTCACGAAGAAAGTGGATATTACAAGAGGAGATGCTACTTCTTTCGAAGATGAATCATGTTCAGATAAACCAACTCC TGAAGATCATGTAAATTTGGCTGATGCTGTAACTGAAACTGTTAAAGCAGAAGATATGGCTGTATCAACTGCTGCTACAAGTGGTGTAGATGCCGAGGAA AAGAATGCATTCACAAAGAAAGTGGATAGTACAAGAGGAGATGCTGCTTCTTTCGAAGATGAATCATGTTCAGATAAACCAGCTCCTGAAGATCATGTAA ATTTGGCTGATGATGTAACTGAAACTGTTAAAGCAGAAGATATGGCTGTATCAATTGCTGCTACAAGTGGTGTGAACAATGAAGATGTCAGCAATGTGAT CTGTCCGTCTTCAGAGTTAGTTTGTTCACCACCTAGGAATTCTACGGAGATGGTAGAATCTCTTTCAATCTCCGAGGATCCAAATCAGACTACTTTGAAC CTTGATGAGGTAACTTCTGCCAAATGTCTGTCAGAATCACAGGTAAAGATGGAAGTGACTTCTACAGATTGGGATTCTAATTCATACAAACCAGTTTCTG AAGACTATCGAAATCAAGAGGTAATTGAAGTTCATAACCCTTCTTCGGAAGTGAGCAACCAGGAGTCTGAATCTAAAGATAACCATCAGAGTCATTGTGG GGAGGTTGGTGACAATACTGTTTGTTCGCCTGTCTGTTATCCACCAGAGTCAGGAAATGGTTTAGAACAGTCAATTGAGGTGCAAGCTGATCAAATTAGT TCAGAGTCCATGCATGCAGACGATGCAAGTTCTTTGTTGAGTAGTCAAACTTCATCTGCTGGCTACCTTTTAGGGCCAGGAATTCCTCTGGATCACACAT CAGAATTGCAATCTGATCAACTAGACAGGAGATGCTTGAAGTCAGGCGAAGCAAGTTCTAGATCAGCAGATGTTAAGTCAGAACAGATACAGAATCTGCA TAACATAACCGAGGAAAGATGCCCTGACCCTTCCAGTTTGAAAGATCTCTCCAGTCAAGAATTTCTACTGCAATCAGCCTGTCAGGGACATAATGTTACT GATCAAGCAACAAATCCATTTGATTCTGCTTTTCCCAGCTTTGGTGTACTCCCTGTTCCTGAGACAAGCCAGGTCAATCCAGAGGCAATGCCACCATTGC CACCTCTACCTCCTATGCAGTGGAGGTTGGGGAAAATTCAACCTGGTCCACTAGATGCAGACAGAGACATGATGGATCATAGTCAACGCACTTCTCAACC AATTGAAACATTTATTCTTGATCAGAAGGTCCAGTTTGATTTCCCAGCATTAGATAGAGAGATTGTGCATCCTTCAAACCCATTTTTGTCTCTCCCTGTT GAAGACAGTCAGAGGTCTCAACACTTGACAACAGAGTTAATGGGAAATTCCTTGCTGCCAACTCGACTCTTGTCAGAAATGCCAACCATTGACAATGATG CACAATATCAACAGGATGACCTCCTGTCAGACAGAACACAATCTGTGAACTCATCTTTGGCTTTATCAGAAATGCCTGATGAGAGGCATGAGCATGGTTT CCTTCAACTAGGAGGAGAATCCACGCAATTCAGTTCCAATCCATTCTCACTAGAGCTGGGCATAAACGATACAGCTGCTTTAAATGATCCAATGCTCACA CAGGGACTACCAATCCGTCTGTTTAACCAATCAGCACCCGAAACAGGATTGGAGGTGAAATTTCCCGGACAGAGTTCACAAAATGCAGAAGGGGAACAAG GGAATTCTTCTGGTAAATCTGCAGTACCACTAAATACAGAAGAAGAGCAGCATCACCATGATTTTGTAACTTCACATGGACTGCCAATATGGCCGCCAAC TACATTAGGTATGACACCACCAACATATGAAGTTGGAAAGACAAATGGAAAGAAGATTCCTCGCCCTCGAAATCCTCTCATTGATGCTGTTGCTGCACTT GATAAAAGCAAGTTGAGAAAGGTGGCTGAACGAGTTCGACCGCAGCTGGGACCCAAGGTAGAAGAAAGAGATTCACTGCTGGAACAGATACGAACCAAGT CCTTTAACTTGAAGCCTGCAACCGCGACAAGGCCTAGCATGCAGGGTGTTCAGGGTCCAAAAACCAACTTGAAGGTTGCTGCCATCTTAGAAAAAGCAAA TGCAATTCGCCAGGCATTGACTGGAAGCGACGAAGATGACGATTCAGACAGCTGGAGTGATTCTTAA
AA sequence Show only first row Show all	>Potri.016G129000.2 pacid=42809885 polypeptide=Potri.016G129000.2.p locus=Potri.016G129000 ID=Potri.016G129000.2.v4.1 annot-version=v4.1 MPLTRYQIRNEYSLADPELYKAADKDDPEALLEGVAMAGLVGVLRQLGDLAEFAAEIFHGLHEEVMTTAARGHGLMARVQQLEAEFPSIEKAFLSQTNHS PFFSSSGVDCHPNLQMEQNLIARGDLPRFVMDSYEECRGPPQLFLLDKFDVAGAGACLMRYTDPSFFKVETASSGIATVEVQREKKIRKKKKGSRYRNGE TPEVVQTSHTKLHELLLQEHFENGHSDPARLVKLKRRQINGSPFDLKPGKSYMEKFVLTPSPERKQVCEDSVTRSPLKFTLDNSSESGYEIHEVSVVSPA KKSLNGVESTSSSPSEQEAMLKPVKDELDGEAVDRGIIKVLDPIVDRGMDELPPTVYKMAIEEELLVDADIKREGTVDGDHSDDMASEVDNYMDALTTMD SEMETDNEYKAKNAPDFINLRIQGADSDANEEQLGFQANSSDSQSIGNSSLSEGGNSLFKKGTSSSSYSETLYNLVENTASDGEGSGKWFPSATSTENHA TNVTDLPSDHPPVYAETGITESHHLVTFNDTREDKIPDPVEASCSSCPTDSNPVFLHSVPVARSMVSPLSGPELVEASSGSTELGSKSPHCERNGLYPTD SFIALTDIPSQMGHDASLPDSSKSHSVDVLDHEDPDMLTDAVVHVSNMSDLASEKKVSDDSVNEVLLTDCAAEHSTLTPAEEQFPHSALPVVELDAGVPS LPDNSNVVKPDGLVSKADDEILTREGSTEISTPVVDTSESECINEHQFSDVTVDASQEELDSTKLRLPCSEENVKLEEISEGPDAEEKNASTKKVDITRG DATYFEHESCSSDKPTPEDHVNLADDVTETVKAEDMAVSTAATSGVDAEEKNAFTKKVDITRGDATYFEHESCSSDKSTPEDHVNLADDVTETVQAEEMA VSTAATSGVDAEEKNAFTKKVDITRGDATSFEHESCSSDKPTPEDHVNLADDVTETVKAEDMAVSTAATSGVDAEEKNAFTKKVDITRGDATSFEDESCS DKPTPEDHVNLADAVTETVKAEDMAVSTAATSGVDAEEKNAFTKKVDITRGDATSFEDESCSDKPTPEDHVNLADAVTETVKAEDMAVSTAATSGVDAEE KNAFTKKVDSTRGDAASFEDESCSDKPAPEDHVNLADDVTETVKAEDMAVSIAATSGVNNEDVSNVICPSSELVCSPPRNSTEMVESLSISEDPNQTTLN LDEVTSAKCLSESQVKMEVTSTDWDSNSYKPVSEDYRNQEVIEVHNPSSEVSNQESESKDNHQSHCGEVGDNTVCSPVCYPPESGNGLEQSIEVQADQIS SESMHADDASSLLSSQTSSAGYLLGPGIPLDHTSELQSDQLDRRCLKSGEASSRSADVKSEQIQNLHNITEERCPDPSSLKDLSSQEFLLQSACQGHNVT DQATNPFDSAFPSFGVLPVPETSQVNPEAMPPLPPLPPMQWRLGKIQPGPLDADRDMMDHSQRTSQPIETFILDQKVQFDFPALDREIVHPSNPFLSLPV EDSQRSQHLTTELMGNSLLPTRLLSEMPTIDNDAQYQQDDLLSDRTQSVNSSLALSEMPDERHEHGFLQLGGESTQFSSNPFSLELGINDTAALNDPMLT QGLPIRLFNQSAPETGLEVKFPGQSSQNAEGEQGNSSGKSAVPLNTEEEQHHHDFVTSHGLPIWPPTTLGMTPPTYEVGKTNGKKIPRPRNPLIDAVAAL DKSKLRKVAERVRPQLGPKVEERDSLLEQIRTKSFNLKPATATRPSMQGVQGPKTNLKVAAILEKANAIRQALTGSDEDDDSDSWSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	0	1
AT1G21630			Calcium-binding EF hand family...		Potri.005G102200 [exp]	6.55	0.6595
AT5G13560			unknown protein		Potri.008G048100 [exp]	10.00	0.5090
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	18.16	0.5699
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Potri.011G041100 [exp]	27.71	0.5024
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.001G049400 [exp]	36.37	0.5076
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Potri.004G155600 [exp]	55.39	0.4949
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	55.90	0.5007
AT3G14067			Subtilase family protein (.1)		Potri.003G067000 [exp]	57.23	0.5210
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Potri.013G131300 [exp]	60.55	0.5100
AT1G53050			Protein kinase superfamily pro...		Potri.001G399700 [exp]	74.29	0.4960

Compare expression of checked genes

Potri.016G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.