Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 383 / 3e-134 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 230 / 3e-74 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 228 / 3e-74 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 220 / 4e-71 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 218 / 2e-70 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 216 / 3e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 213 / 4e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 214 / 6e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 204 / 8e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 202 / 8e-64 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G105900 [exp] 536 / 0 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 414 / 1e-146 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 258 / 7e-86 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 258 / 1e-85 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 248 / 9e-82 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 244 / 3e-80 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 243 / 1e-79 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 243 / 1e-79 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 238 / 9e-78 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029438 [exp] 393 / 6e-138 AT3G51680 396 / 3e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022756 [exp] 392 / 1e-137 AT3G51680 397 / 2e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 347 / 9e-120 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 248 / 2e-81 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 243 / 2e-79 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 244 / 4e-79 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 241 / 5e-79 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 239 / 3e-78 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 239 / 4e-78 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 239 / 6e-78 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.016G129100.1 pacid=42810650 polypeptide=Potri.016G129100.1.p locus=Potri.016G129100 ID=Potri.016G129100.1.v4.1 annot-version=v4.1 ATGCCTTGTCAAGTGATGCAAGAGAAAACCCTTCAAAGCTTTTATGCCGCGGGAAGGGAAAAGTCGACAGAAAACAGTCCTTGCTCTCCTGGAAGGTTGG AGGGAAGAGTAGCAGTGGTCACAGGTGGTGCTCGAGGAATTGGAGAGGCAACAGTAAGGCTTTTTGCAAGACATGGTGCCAAAGTAGTGATTGCTGATGT TGAGGATACTCTCGGAACTTTGCTAGCAAACTCACTAGCCCCTTCAGTTTCCTTTGTTCATTGTGATGTTAGCTTAGAAGAAGACATTGAGAACCTGATA AACTCCACAGTTTCTCACTATGGTAAGCTAGATGTTCTTTTCAACAATGCTGGGGTGCTTGGAAATCAATCGAAGAACAAGAGCATTGTCAATTTTGATG CTGAAGAATTTGATCGTGTCATGCAAGTGAATGTTAGAGGCGTGGCACTAGGAATTAAGCACGCGGCAAGAGTGATGATTCCTAGAGGAGTTGGGTGTAT TATTTCCACAGCCAGTGTAGCTGGTGTCATGGGAGGGCTTGGTCCTCATGCCTATACAGCTTCGAAGCATGCCATTGTTGGGCTCACAAAGAACACAGCA TGTGAGCTTGGCAGGTATGGGATTCGAGTCAATTGCATCTCTCCATTTGGGGTGGCTACATCTATGCTTGTTAATGCGTGGAGAAGTGGCGATGAAGAGG AAGATTGCTTGAACTTTGGATTGCCTTGTGAAAAGGAAGTGGAGAAGATGGAAGACTTTGTTAGAGGCCTGGCTAACCTAAAAGGTCCAACTCTAAGGGC TAGAGATATAGCCGAGGCTGCACTTTATCTAGCTAGTGATGAATCCAAGTATGTTAGTGGTCATAATCTTGTCGTGGATGGTGGAATTACCACTTCAAGA AATTGTGTTGGCTTGTAA
AA sequence Show only first row Show all	>Potri.016G129100.1 pacid=42810650 polypeptide=Potri.016G129100.1.p locus=Potri.016G129100 ID=Potri.016G129100.1.v4.1 annot-version=v4.1 MPCQVMQEKTLQSFYAAGREKSTENSPCSPGRLEGRVAVVTGGARGIGEATVRLFARHGAKVVIADVEDTLGTLLANSLAPSVSFVHCDVSLEEDIENLI NSTVSHYGKLDVLFNNAGVLGNQSKNKSIVNFDAEEFDRVMQVNVRGVALGIKHAARVMIPRGVGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTA CELGRYGIRVNCISPFGVATSMLVNAWRSGDEEEDCLNFGLPCEKEVEKMEDFVRGLANLKGPTLRARDIAEAALYLASDESKYVSGHNLVVDGGITTSR NCVGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Potri.016G129100 [exp]	0	1
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	1.41	0.9538
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	2.00	0.9465	Pt-PAP8.3
					Potri.005G129350 [exp]	3.46	0.9031
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	6.00	0.9008
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	6.92	0.8998
AT2G40260	GARP		Homeodomain-like superfamily p...		Potri.005G205900 [exp]	8.00	0.8797
AT2G38870			Serine protease inhibitor, pot...		Potri.010G075200 [exp]	9.00	0.8901
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.017G055400 [exp]	9.64	0.8611
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.012G041900 [exp]	13.56	0.8507	NANN.1
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154800 [exp]	14.49	0.8704

Compare expression of checked genes

Potri.016G129100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.